View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7835_low_3 (Length: 384)
Name: NF7835_low_3
Description: NF7835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7835_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 6 - 383
Target Start/End: Original strand, 27486147 - 27486524
Alignment:
| Q |
6 |
gtcgaataatatttaaacggaaacccatgtttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaaaaatttagaagaatgtaa |
105 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27486147 |
gtcgaataacatttaaacggaaacccatttttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaaaaatttagaagaatgtaa |
27486246 |
T |
|
| Q |
106 |
ctaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagctaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27486247 |
ctaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagctaa |
27486346 |
T |
|
| Q |
206 |
attatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaacattgtaccaccaccctttcaagttcaacctcatattttatcat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |
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| T |
27486347 |
attatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaacattataccaccaccctttcaaattcaacctcatattttttcat |
27486446 |
T |
|
| Q |
306 |
ccattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtccatct |
383 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27486447 |
ccattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtccatct |
27486524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 6 - 380
Target Start/End: Original strand, 27479087 - 27479461
Alignment:
| Q |
6 |
gtcgaataatatttaaacggaaacccatgtttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaaaaatttagaagaatgtaa |
105 |
Q |
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| T |
27479087 |
gtcgaataacatttaaacggaaacccatttttggtgattgtttgagagagaagaacaaactcaacaaagtaaatatctcaaaaaatttagaagaatgtaa |
27479186 |
T |
|
| Q |
106 |
ctaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagctaa |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27479187 |
ctaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagctaa |
27479286 |
T |
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| Q |
206 |
attatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaacattgtaccaccaccctttcaagttcaacctcatattttatcat |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27479287 |
attatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaacattgtaccaccaccctttcaagttcaacctcatattttatcat |
27479386 |
T |
|
| Q |
306 |
ccattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtcca |
380 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| |
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| T |
27479387 |
ctattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtcca |
27479461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 5 - 380
Target Start/End: Complemental strand, 27506635 - 27506263
Alignment:
| Q |
5 |
tgtcgaataatatttaaacggaaacccatgtttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaaaaatttagaagaatgta |
104 |
Q |
| |
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|||||||||| |||||| ||||||||||| |||||||||||||||| || ||||||||||||||| |||| ||| ||| |||||| ||||||||||| || |
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| T |
27506635 |
tgtcgaataacatttaagcggaaacccatttttggtgattgtttgaaggtgaagaacaaactcaagaaagcaaagatcacaaaaa-tttagaagaatcta |
27506537 |
T |
|
| Q |
105 |
actaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagcta |
204 |
Q |
| |
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|||||||||| ||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| || |
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| T |
27506536 |
actaatactttaggataccaatgacttgtgttgtgtttgatgcctatttgtaagtatatttatagttactaatattctttgcaaacctaattccaagata |
27506437 |
T |
|
| Q |
205 |
aattatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaacattgtaccaccaccctttcaagttcaacctcatattttatca |
304 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||| ||| |
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| T |
27506436 |
aattattgtttgaaagaattaaaggataagatgatatagcatgtgg-gttgtctaaagattgta-caccaccctttcaaattcaacctcatatttgttca |
27506339 |
T |
|
| Q |
305 |
tccattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtcca |
380 |
Q |
| |
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| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
27506338 |
tgcattaactatcacttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtcca |
27506263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 152 - 352
Target Start/End: Complemental strand, 27501137 - 27500938
Alignment:
| Q |
152 |
ttgtaagtatatttatagttactgagattctttgcaaacctaattccaagctaaattatttcttgaaagagttaaaggataagatgatataccatgtggt |
251 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
27501137 |
ttgttagtatatttatagttattgaggttctttggaaacccaattacaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtggt |
27501038 |
T |
|
| Q |
252 |
gttgtctaaacattgtaccaccaccctttcaagttcaacctcatattttatcatccattaactatcacttcataattgtgtaaacatgtttcagacatgt |
351 |
Q |
| |
|
||||| | || |||||||| |||||||||||| | ||||| | ||||| |||| |||||| | ||||||||||||||||| |||||||||||||||| |
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| T |
27501037 |
gttgttttaagattgtacc-ccaccctttcaactgcaaccacttatttgttcatgcattaagaagtacttcataattgtgtaagcatgtttcagacatgt |
27500939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 27527001 - 27526881
Alignment:
| Q |
108 |
aatacttgaggatgtcaacgacttgtgttgtgtttg-aagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagctaaa |
206 |
Q |
| |
|
||||||||| |||| ||| |||||||||| | |||| ||| || |||||||||||||||||||||||||| |||| || |||||||||||||||||||| |
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| T |
27527001 |
aatacttgacgatgccaatgacttgtgttatttttggaag--aaattgtaagtatatttatagttactgaggttctctggaaacctaattccaagctaaa |
27526904 |
T |
|
| Q |
207 |
ttatttcttgaaagagttaaagg |
229 |
Q |
| |
|
||||| || ||||||||||||| |
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|
| T |
27526903 |
ttattgtttaaaagagttaaagg |
27526881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 27468898 - 27468943
Alignment:
| Q |
318 |
acttcataattgtgtaaacatgtttcagacatgttttcttcattat |
363 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
27468898 |
acttcataattttgtaaacatgcttcagacatgttttcttcattat |
27468943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 27503499 - 27503442
Alignment:
| Q |
323 |
ataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtcca |
380 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| | | |||||||||||| |
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|
| T |
27503499 |
ataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtcca |
27503442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 380
Target Start/End: Original strand, 27556962 - 27557021
Alignment:
| Q |
321 |
tcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtcca |
380 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||||||||| | ||||||||| |||| |
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|
| T |
27556962 |
tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttcca |
27557021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 380
Target Start/End: Complemental strand, 27489721 - 27489628
Alignment:
| Q |
287 |
caacctcatattttatcatccattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtcca |
380 |
Q |
| |
|
||||||||||||| |||| |||||| | |||| ||||| |||||||||| || |||||||||||||||||||| ||| ||| |||||||| |
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|
| T |
27489721 |
caacctcatatttattcatgcattaattggtactttgtaattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtcca |
27489628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 27524102 - 27524041
Alignment:
| Q |
319 |
cttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtcca |
380 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||| | | || ||||||||| |
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|
| T |
27524102 |
cttcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
27524041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 27473128 - 27473183
Alignment:
| Q |
156 |
aagtatatttatagttactgagattctttgcaaacctaattccaagctaaattatt |
211 |
Q |
| |
|
||||||||||||||||| |||| |||| || ||| | ||||||||||||||||||| |
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|
| T |
27473128 |
aagtatatttatagttattgaggttctctgaaaatccaattccaagctaaattatt |
27473183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 27514472 - 27514410
Alignment:
| Q |
318 |
acttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtcca |
380 |
Q |
| |
|
||||||||||| |||||||||| || ||||||||||||| |||||| | | || ||||||||| |
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|
| T |
27514472 |
acttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtcca |
27514410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 27476133 - 27476173
Alignment:
| Q |
323 |
ataattgtgtaaacatgtttcagacatgttttcttcattat |
363 |
Q |
| |
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|||||| ||||| |||| ||||||||||||||||||||||| |
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|
| T |
27476133 |
ataattttgtaagcatgcttcagacatgttttcttcattat |
27476173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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