View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7835_low_4 (Length: 312)
Name: NF7835_low_4
Description: NF7835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7835_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 55303614 - 55303909
Alignment:
| Q |
1 |
ctatcgttagaatcggtgttgtatataaagtggctggtagaaaagtataaagggtgtaataagctgttcttttgttgctctgatgaatcaaggctacaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55303614 |
ctatcgttagaatcggtgttgtatataaagtggctggtagaaaagtataaagggtgtaataagctgttcttttgttgctctgatgaatcaaggctacaac |
55303713 |
T |
|
| Q |
101 |
caatccaatcatattgcaccacggtccgcctctcatcaccatcaacccaacaggtcactcagcatttgctattacttacctttcctctaatcatacaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55303714 |
caatccaatcatattgcaccacggtccgcctctcatcaccatcaacccaacaggtcactcagcatttgctattacttacctttcctctaatcatacaatt |
55303813 |
T |
|
| Q |
201 |
tcagactcaattctatttctgttgttatcctaatcacttataatctcgtcatctagtaattgcacttttgcatcaacatcttgcatattatatgaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
55303814 |
tcagactcaattctatttctgttgttatcctaatcacttataatctcgtcatctagtaattgcacttttgcatcaacatcttgcgtattatatgaa |
55303909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University