View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7835_low_6 (Length: 254)

Name: NF7835_low_6
Description: NF7835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7835_low_6
NF7835_low_6
[»] chr2 (10 HSPs)
chr2 (20-247)||(39139828-39140057)
chr2 (21-115)||(39471484-39471579)
chr2 (32-99)||(2363528-2363595)
chr2 (128-174)||(39455121-39455168)
chr2 (199-244)||(39420029-39420074)
chr2 (199-244)||(39452106-39452151)
chr2 (44-101)||(44625123-44625180)
chr2 (199-247)||(39156693-39156741)
chr2 (25-81)||(39372205-39372261)
chr2 (57-97)||(39503159-39503199)
[»] chr7 (2 HSPs)
chr7 (20-168)||(19810141-19810288)
chr7 (195-244)||(19810090-19810139)
[»] chr6 (1 HSPs)
chr6 (26-104)||(16115240-16115317)
[»] chr5 (1 HSPs)
chr5 (201-241)||(33563213-33563253)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 39140057 - 39139828
Alignment:
Q  20 taagcacaacaaattgcttcttcctgataagatcttcaacaaattctgtaaggtacaagaaaatttcacttcatcaaaacataccagaacaaacataagt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39140057 taagcacaacaaattgcttcttcctgataagatcttcaacaaattctgtaaggtacaagaaaatttcacttcatcaaaacataccagaacaaacataagt 39139958  T
Q  120 tctggttaacaaaaaaccaaggaaattggactgaataattcaaaatccatcaaaccatttataacatgg--gagatacatgaagagagataaatttgaag 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  39139957 tctggttaacaaaaaaccaaggaaattggtctgaataattcaaaatccatcaaaccatttataacatggaagagatacatgaagagagatgaatttgaag 39139858  T
Q  218 tctatttcattttccacgcattaacaccaa 247  Q
    ||||||||||||||||||||||||||||||    
T  39139857 tctatttcattttccacgcattaacaccaa 39139828  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 39471484 - 39471579
Alignment:
Q  21 aagcacaacaaattgcttcttcctgataagatct-tcaacaaattctgtaaggtacaagaaaatttcacttcatcaaaacataccagaacaaacat 115  Q
    |||||||||||||||||||||||| ||||| | | |||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||||    
T  39471484 aagcacaacaaattgcttcttcctaataagttttctcaacaaaatctgcaaggtacaaaaaaaattcacttcatcaaaacataccagaacaaacat 39471579  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 2363595 - 2363528
Alignment:
Q  32 attgcttcttcctgataagatcttcaacaaattctgtaaggtacaagaaaatttcacttcatcaaaac 99  Q
    |||||| |||| |||||||||  | |||||| |||| ||||| || ||||||||||||||||||||||    
T  2363595 attgctgcttcatgataagattctgaacaaaatctgcaaggtgcaggaaaatttcacttcatcaaaac 2363528  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 39455168 - 39455121
Alignment:
Q  128 acaaaaaaccaaggaaa-ttggactgaataattcaaaatccatcaaac 174  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  39455168 acaaaaaactaaggaaaattggactgaataactcaaaatccatcaaac 39455121  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 39420029 - 39420074
Alignment:
Q  199 aagagagataaatttgaagtctatttcattttccacgcattaacac 244  Q
    ||||||||||||||| |||| ||||||||||| || ||||||||||    
T  39420029 aagagagataaatttcaagtatatttcattttacaagcattaacac 39420074  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 39452151 - 39452106
Alignment:
Q  199 aagagagataaatttgaagtctatttcattttccacgcattaacac 244  Q
    |||||||||| |||| ||||| ||||||||||||| ||||||||||    
T  39452151 aagagagatacatttcaagtcaatttcattttccaagcattaacac 39452106  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 44625180 - 44625123
Alignment:
Q  44 tgataagatcttcaacaaattctgtaaggtacaagaaaatttcacttcatcaaaacat 101  Q
    |||||||||  |||||||| |||| |||||  ||||||| ||||||||||||||||||    
T  44625180 tgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaacat 44625123  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 39156741 - 39156693
Alignment:
Q  199 aagagagataaatttgaagtctatttcattttccacgcattaacaccaa 247  Q
    ||||||||| | ||| || |||||||||||||||| |||||||||||||    
T  39156741 aagagagatcagtttcaattctatttcattttccaagcattaacaccaa 39156693  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 39372261 - 39372205
Alignment:
Q  25 acaacaaattgcttcttcctgataagatcttcaacaaattctgtaaggtacaagaaa 81  Q
    ||||||||||||||| |||| |||||||  |||||||| |||| ||||| |||||||    
T  39372261 acaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaagaaa 39372205  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 39503159 - 39503199
Alignment:
Q  57 aacaaattctgtaaggtacaagaaaatttcacttcatcaaa 97  Q
    |||||| |||| ||||||||| |||||||||||||||||||    
T  39503159 aacaaaatctgcaaggtacaacaaaatttcacttcatcaaa 39503199  T

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Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 19810288 - 19810141
Alignment:
Q  20 taagcacaacaaattgcttcttcctgataagatcttcaacaaattctgtaaggtacaagaaaatttcacttcatcaaaacataccagaacaaacataagt 119  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  19810288 taagcacaacaaattgtttcttcctgataagatcctcaaaaaattctgtaaggtacaagaaagtttcacttcatcaaaacataccaga--aaacataagt 19810191  T
Q  120 tctggttaac-aaaaaaccaaggaaattggactgaataattcaaaatcca 168  Q
    ||| |||||| ||||||||||| |||||||||||||||||||||||||||    
T  19810190 tctagttaacaaaaaaaccaagaaaattggactgaataattcaaaatcca 19810141  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 19810139 - 19810090
Alignment:
Q  195 catgaagagagataaatttgaagtctatttcattttccacgcattaacac 244  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  19810139 catgaagagagataaatttgaagtctatttgattttccaagcattaacac 19810090  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 16115317 - 16115240
Alignment:
Q  26 caacaaattgcttcttcctgataagatcttcaacaaattctgtaaggtacaagaaaatttcacttcatcaaaacatacc 104  Q
    |||||||||||||  |||||||||||| || |||||| |||| |||||||||| |||||||||||||||||||| ||||    
T  16115317 caacaaattgctttctcctgataagatatttaacaaaatctgcaaggtacaag-aaatttcacttcatcaaaacttacc 16115240  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 33563253 - 33563213
Alignment:
Q  201 gagagataaatttgaagtctatttcattttccacgcattaa 241  Q
    ||||||||||||| ||||||||||||||||| | |||||||    
T  33563253 gagagataaatttcaagtctatttcattttcaaagcattaa 33563213  T

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