View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7836_high_15 (Length: 340)
Name: NF7836_high_15
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 2488296 - 2488624
Alignment:
| Q |
1 |
ataacccgtagcagctcatatgaacaaaaataaggcaacaatgagcattgagagattgctcccttgctatgtctatttggctaaatttggagcatgcaag |
100 |
Q |
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| T |
2488296 |
ataacccgtagcagctcatatgaacaaaaataaggcaacaatgagcattgagagattgctcccttgctatgtctatttggctaaatgtggagcatgcaag |
2488395 |
T |
|
| Q |
101 |
tgttagagaagatttctttgtgggtgatttaaagaattggttaagttttaatatgagcaaagatgtggggtggagtatgaaggtcgagtggaaggatttt |
200 |
Q |
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| T |
2488396 |
tgttagagaagatttctttgtgggtgatttaaagcattggttaagttttaatatgagcaaagatgtgggttggagtatgaaggtcgagtggaaggatttt |
2488495 |
T |
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| Q |
201 |
tgggaaatggcgtaccattttttgtggtatttgagaaataagaaaaatcgtgaagaacattttcataggttaatttacctgatacatgatgttttgaagc |
300 |
Q |
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| T |
2488496 |
tgggaaatggcgtaccattttttgtggtatttgagaaataagaaaaatcgtgaagaacattttcataggtcaatttacccgatacatgatgttttgaagc |
2488595 |
T |
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| Q |
301 |
gcatttgagattattatattttgatgtcc |
329 |
Q |
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| T |
2488596 |
gcatttgagattattatattttgatgtcc |
2488624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 47 - 230
Target Start/End: Complemental strand, 12623351 - 12623167
Alignment:
| Q |
47 |
attgagagattgctcccttgctatgtctatttggctaaatttggagcatgcaagtgttagagaagatttc-tttgtgggtgatttaaagaattggttaag |
145 |
Q |
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|||||||||||||||||||| |||| || ||||||||||| || |||||| |||| ||||||||| ||| ||||||| |||||||||| |||||||||| |
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| T |
12623351 |
attgagagattgctcccttgttatgcctctttggctaaatgtgaagcatgtgagtgctagagaagaattcctttgtggatgatttaaagcattggttaag |
12623252 |
T |
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| Q |
146 |
ttttaatatgagcaaagatgtggggtggagtatgaaggtcgagtggaaggatttttgggaaatggcgtaccattttttgtggtat |
230 |
Q |
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| T |
12623251 |
ttttaatacgagtgaagatgttgggtggagtatgaaggtcgagtggaaggacttttgggcaatggcgtgccattgtttgtggtat |
12623167 |
T |
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