View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7836_high_16 (Length: 335)
Name: NF7836_high_16
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_high_16 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 40 - 335
Target Start/End: Complemental strand, 31052684 - 31052393
Alignment:
| Q |
40 |
aataagataaaattttggcctaaatatatgttatattatatgctatgaaatatacttcagaatcacaccaaattgagatcaatcgaagcaacagataagg |
139 |
Q |
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| T |
31052684 |
aataagataaaattt-ggcctaaatatatgttatattatatgctatgaaatatacttcataatcacaccaaattgagattaatcgaagcaacagataaag |
31052586 |
T |
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| Q |
140 |
tagtacaaattccataacaa-aaaatgttgaaagccaatacacgattttaatttataaatatatatcta-cctttgaaattgctggattaagtgaaggaa |
237 |
Q |
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| T |
31052585 |
tagcacaaattccataacaaaaaaaagtagaaaaccaatacacgattttgatttataaatatatatatataccttgaaattgctggatcaagtgaaggaa |
31052486 |
T |
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| Q |
238 |
aaattgacagtatgtcactatttaatttataaaggcaagctgaatcatcatcgatccactatcaacaatcgaaaaatatttatttatgatgataaact |
335 |
Q |
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| T |
31052485 |
aaattgacagtat----atatgtta-ctataaaggcaagctgaatcatcatcaatccagtatcaacagtcgcaaaatatttatttatgatgataaact |
31052393 |
T |
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Target: chr7 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 158 - 335
Target Start/End: Original strand, 3816644 - 3816821
Alignment:
| Q |
158 |
aaaaaatgttgaaagccaatacacgattttaatttataaatatatatctacctttgaaattgctggattaagtgaaggaaaaattgacagtatgtcacta |
257 |
Q |
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| T |
3816644 |
aaaaaatgtagaaagccaatacacgattttaatttataaatatatatctacctttgaaattgctggatcaagtgaaggaaaaattgacagtatgtcacta |
3816743 |
T |
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| Q |
258 |
tttaatttataaaggcaagctgaatcatcatcgatccactatcaacaatcgaaaaatatttatttatgatgataaact |
335 |
Q |
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| T |
3816744 |
tttaatttataaaggcaagctgaatcatcatcgatccactatcaacaatcgcaaaatatttatttatgatgataaact |
3816821 |
T |
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