View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7836_high_18 (Length: 236)
Name: NF7836_high_18
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 3816809 - 3817024
Alignment:
| Q |
1 |
atgatgataaactaaattaattaatactgtccaagacaaatacgtgtcggaaaa-aaccaaatacgacacaaagcaaataattttctcaagttttatcga |
99 |
Q |
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| T |
3816809 |
atgatgataaactaaattaattaatactgtccaagacaaatacgtgttggaaaaaaaccaaatacgacgcaaagcaaataattttctcaagttttatcga |
3816908 |
T |
|
| Q |
100 |
acaaaataacaataaacacaggcacatcaattccaaaagtcaaagtatgcaaactcaatatttaatcacgatggacatcgaggaccgaaattaaatgcac |
199 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
3816909 |
acacaatcacaataaacacaggcacatcaattccaaaagtcaaagtatgcaaactcaatatttaatcaggatggacatcgaggactgaaattaaatgcac |
3817008 |
T |
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| Q |
200 |
aaatgtttgtcacttc |
215 |
Q |
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|||||||||||||||| |
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| T |
3817009 |
aaatgtttgtcacttc |
3817024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 31052405 - 31052194
Alignment:
| Q |
1 |
atgatgataaactaaattaattaatactgtccaagacaaatacgtgtcggaaaaaaccaaatacgacacaaagcaaataattttctcaagttttatcgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31052405 |
atgatgataaactaaattaattaatactgtccaagacaaatacgtgccggcaaaaaccaaatacgacacaaagcaaataattttctcaatttttatcgaa |
31052306 |
T |
|
| Q |
101 |
ca-----aaataacaataaacacaggcacatcaattccaaaagtcaaagtatgcaaactcaatatttaatcacgatggacatcgaggaccgaaattaaat |
195 |
Q |
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|| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31052305 |
caaaagtaaataacaataaacacaggcacat--attccaaaagtcaaagtatggaaactcaatatttaatcaagatggacatcgaggaccgaaattaaat |
31052208 |
T |
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| Q |
196 |
gcacaaatgtttgt |
209 |
Q |
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|||||||||||||| |
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| T |
31052207 |
gcacaaatgtttgt |
31052194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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