View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7836_high_2 (Length: 571)
Name: NF7836_high_2
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 20 - 565
Target Start/End: Original strand, 24402093 - 24402638
Alignment:
| Q |
20 |
gaaatctcttgacagggtttggtttttatgagccttactggcttgttgacattgccaatgtttgcattatggttcatttggttggaggttatcaggtact |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24402093 |
gaaatctcttgacagggtttggtttttatgagccttactggcttgttgacattgccaatgtttgcattatggttcatttggttggaggttatcaggtact |
24402192 |
T |
|
| Q |
120 |
actcgtgtcaaattgacgaaacaattctgccgtcattgttgttttctgatattaactttttctaatacatttgcttcattcacacgctcttgtcgacaga |
219 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24402193 |
actcgtgtcaaattgacgaaacaattctaccgtcattgttgttttctgatattaactttttctaatacatttgcttcattcacacgctcttgtcgacaga |
24402292 |
T |
|
| Q |
220 |
tatacagtcaaccaatatatagcactgctgacagatggtatacaagaaaattcccaaagagcagctttgtgaatgatttccacgtagtgaaacttcctct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
24402293 |
tatacagtcaaccaatatatagcactgctgacagatggtatacaagaaaattcccaaagagcaactttgtgaatgatttccacatagtgaaacttcctct |
24402392 |
T |
|
| Q |
320 |
attacctgcttttgagataaaccttttcaggttttgttttcgaacggcctttgtaatttcaaccgttggatttgcaattctatttccttacttcaactca |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24402393 |
attacctgcttttgagataaaccttttcaggttttgttttcgaacggcctttgtaatttcaaccgttggatttgcaattctatttccttacttcaactca |
24402492 |
T |
|
| Q |
420 |
gttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaataaaattggagcttggactagga |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24402493 |
gttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaataaaattggagcttggactagga |
24402592 |
T |
|
| Q |
520 |
gatggattgttctaaggatttttagctttgcttgctttcttctcac |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
24402593 |
gatggattgttctaaggatttttagctttgcttgctttcttgtcac |
24402638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 216 - 565
Target Start/End: Original strand, 24415105 - 24415454
Alignment:
| Q |
216 |
cagatatacagtcaaccaatatatagcactgctgacagatggtatacaagaaaattcccaaagagcagctttgtgaatgatttccacgtagtgaaacttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||| |||| ||||| ||| || || |||||||||| |||||||| ||||||||||| |
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|
| T |
24415105 |
cagatatacagtcaaccaatatatagtactgctgatagatggttcacaaaaaaataccccaacagtggctttgtgaacaatttccacaaagtgaaacttc |
24415204 |
T |
|
| Q |
316 |
ctctattacctgcttttgagataaaccttttcaggttttgttttcgaacggcctttgtaatttcaaccgttggatttgcaattctatttccttacttcaa |
415 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| || |||||| |||| || ||| ||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
24415205 |
ctctattaccttcttttgagataaaccttttcagattctgttttagaacaagctatgtgatttcaaccactggatttgcaattttatttccttacttcaa |
24415304 |
T |
|
| Q |
416 |
ctcagttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaataaaattggagcttggact |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
24415305 |
ctcagttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaagaaagttggagcttggact |
24415404 |
T |
|
| Q |
516 |
aggagatggattgttctaaggatttttagctttgcttgctttcttctcac |
565 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
24415405 |
agaaaatggattgttctaaggatttttagctttgcttgcttccttgtcac |
24415454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 216 - 565
Target Start/End: Complemental strand, 24419420 - 24419071
Alignment:
| Q |
216 |
cagatatacagtcaaccaatatatagcactgctgacagatggtatacaagaaaattcccaaagagcagctttgtgaatgatttccacgtagtgaaacttc |
315 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| ||||||| ||| ||||| ||| || || |||||||||| ||||||||| ||||||||||| |
|
|
| T |
24419420 |
cagatatactgtcaaccaatatatactactgctgatagatggttctcaaaaaaataccctaacagtggctttgtgaacgatttccacaaagtgaaacttc |
24419321 |
T |
|
| Q |
316 |
ctctattacctgcttttgagataaaccttttcaggttttgttttcgaacggcctttgtaatttcaaccgttggatttgcaattctatttccttacttcaa |
415 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||||| || |||| | |||| || ||| ||||||||| |||| | |||||| |||||||||||||||| |
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|
| T |
24419320 |
ctctattaccagctttggagataaatcttttcagattctgttatagaacaagctatgtgatttcaaccactggactagcaattttatttccttacttcaa |
24419221 |
T |
|
| Q |
416 |
ctcagttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaataaaattggagcttggact |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
24419220 |
ctcagttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaagaaagttggagcttggact |
24419121 |
T |
|
| Q |
516 |
aggagatggattgttctaaggatttttagctttgcttgctttcttctcac |
565 |
Q |
| |
|
|| | |||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24419120 |
agaaaatggattgctctaaggatttttagctttgcttgctttcttgtcac |
24419071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 214 - 560
Target Start/End: Original strand, 24380069 - 24380415
Alignment:
| Q |
214 |
gacagatatacagtcaaccaatatatagcactgctgacagatggtatacaagaaaattcccaaagagcagctttgtgaatgatttccacgtagtgaaact |
313 |
Q |
| |
|
||||| |||||||||||||||||| || |||||||| ||||||| | |||||||||||||| |||| |||||||||||||||||||| ||||||||| |
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|
| T |
24380069 |
gacaggtatacagtcaaccaatatttaatactgctgatagatggtgttcaagaaaattcccagagagtggctttgtgaatgatttccacaaagtgaaact |
24380168 |
T |
|
| Q |
314 |
tcctctattacctgcttttgagataaaccttttcaggttttgttttcgaacggcctttgtaatttcaaccgttggatttgcaattctatttccttacttc |
413 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||||| ||||| |||| || ||| ||||||||| |||| |||||||| | |||||||||||| |
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|
| T |
24380169 |
tcctctattaccttcttttaagataaatcttttcaggttctgtttcagaacaagctatgtgatttcaaccactggacttgcaattttctttccttacttc |
24380268 |
T |
|
| Q |
414 |
aactcagttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaataaaattggagcttgga |
513 |
Q |
| |
|
|| | |||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24380269 |
aatcaaattctaggagtactaggaggcataaatttctggccactggctatatatttcccagttgaaatgtactttgtacagaagaaaattggagcttgga |
24380368 |
T |
|
| Q |
514 |
ctaggagatggattgttctaaggatttttagctttgcttgctttctt |
560 |
Q |
| |
|
||| | |||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
24380369 |
ctaaaaaatggattgttctcaggatatttagctttgcttgctttctt |
24380415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 24379289 - 24379392
Alignment:
| Q |
20 |
gaaatctcttgacagggtttggtttttatgagccttactggcttgttgacattgccaatgtttgcattatggttcatttggttggaggttatcaggtact |
119 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
24379289 |
gaaatctcttgacagggtttgggttttatgagccttactggcttattgaccttgccaatgtttgcattatcattcatttggttggaggatatcaggtact |
24379388 |
T |
|
| Q |
120 |
actc |
123 |
Q |
| |
|
|||| |
|
|
| T |
24379389 |
actc |
24379392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 24414346 - 24414449
Alignment:
| Q |
20 |
gaaatctcttgacagggtttggtttttatgagccttactggcttgttgacattgccaatgtttgcattatggttcatttggttggaggttatcaggtact |
119 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
24414346 |
gaaatctcttgacagggtttggattttttgagccttattggcttattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtact |
24414445 |
T |
|
| Q |
120 |
actc |
123 |
Q |
| |
|
|||| |
|
|
| T |
24414446 |
actc |
24414449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 24419615 - 24419514
Alignment:
| Q |
20 |
gaaatctcttgacagggtttggtttttatgagccttactggcttgttgacattgccaatgtttgcattatggttcatttggttggaggttatcaggtact |
119 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
24419615 |
gaaatctcttgacagggtttggattttttgagccttattggcttattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtact |
24419516 |
T |
|
| Q |
120 |
ac |
121 |
Q |
| |
|
|| |
|
|
| T |
24419515 |
ac |
24419514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 462 - 559
Target Start/End: Original strand, 42363075 - 42363172
Alignment:
| Q |
462 |
atatatttcccagttgaaatgtactttgtacagaataaaattggagcttggactaggagatggattgttctaaggatttttagctttgcttgctttct |
559 |
Q |
| |
|
||||||||||| || || ||||| ||||||||||||||||||| ||||||| ||| | |||||||||||| |||| ||||||||||| |||| |||| |
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|
| T |
42363075 |
atatatttcccggtagagatgtattttgtacagaataaaattgaagcttggtctacaaaatggattgttcttaggacttttagctttgtttgccttct |
42363172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 42362504 - 42362601
Alignment:
| Q |
20 |
gaaatctcttgacagggtttggtttttatgagccttactggcttgttgacattgccaatgtttgcattatggttcatttggttggaggttatcaggta |
117 |
Q |
| |
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|||| ||||||||||| ||||| |||||||| || || ||||| ||||| |||| |||| ||||||| | |||||||||| ||||| ||||||||| |
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| T |
42362504 |
gaaacctcttgacaggttttggattttatgaaccatattggctcattgactttgctaatgcttgcattgttcttcatttggtgggaggatatcaggta |
42362601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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