View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7836_high_3 (Length: 498)
Name: NF7836_high_3
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 236 - 478
Target Start/End: Original strand, 33880400 - 33880641
Alignment:
| Q |
236 |
agtgtggaaaatacatgtttttcttttgaagttcat---agttacatacattcgaacttaaatgtgaagtgatattatttagttgtcgaaatatttaaaa |
332 |
Q |
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| T |
33880400 |
agtgtggaaaatacatgtttttcttttgaagttcatcatattaacatacattcgaacttaaatgtgaagtgatatta----gttgttgaaatatttaaaa |
33880495 |
T |
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| Q |
333 |
taaaaaatagctaacttggattcttgtaaaatttacactgttacgttatgacaaacggagggtgttggattttgtggacaaaaatccgcgtttgtaacat |
432 |
Q |
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| T |
33880496 |
taaaaaatagctaacttggatccttgtaaaatttacactgttacgttatgacaaacggagagtgttggattttgtggacaaaaatccgcgtttgtaacat |
33880595 |
T |
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| Q |
433 |
tgtgtcacttataagttttagaagagactaaggatgtgctgtttat |
478 |
Q |
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| T |
33880596 |
tgtgtcacttataagttttagaagagactaaggatgtgctgtttat |
33880641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 33879936 - 33880087
Alignment:
| Q |
1 |
tgaattgtatttagcatcttttacattgtcaaaacaattacaatatagcaagaggcaatggaggttgactttttggttttgaatgaaaacaaagacttta |
100 |
Q |
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| T |
33879936 |
tgaattgtatttagcatcttttacattgtcaaaacaattacaatatagcaagaggcaatggaggttgactttttggttttgaatgaaaacaaagacttta |
33880035 |
T |
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| Q |
101 |
taccgagagattatcattgaccttcactaaattattcaactaaggttgttta |
152 |
Q |
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| T |
33880036 |
taccgagagattatcattgactttcactaaattattgaactaagtttgttta |
33880087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 33875678 - 33875787
Alignment:
| Q |
14 |
gcatcttttacattgtcaaaacaattacaatatagcaagaggcaatggaggttgactttttggttttgaatgaaaacaaagactttataccgagagatta |
113 |
Q |
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| T |
33875678 |
gcatcttttacattgtcaaaacaattacaagatagcaagagataatgaaagttgacttagtggtttagaatggagacaaagaattcat---gagagatta |
33875774 |
T |
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| Q |
114 |
tcattgaccttca |
126 |
Q |
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| T |
33875775 |
ttattgactttca |
33875787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 472
Target Start/End: Original strand, 33875999 - 33876071
Alignment:
| Q |
400 |
gattttgtggacaaaaatccgcgtttgtaacattgtgtcacttataagttttagaagagactaaggatgtgct |
472 |
Q |
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| T |
33875999 |
gattttgtagaccaaaatctgcgttttgaactttgtgtcactagtaagttttagaagacgctaaggatgtgct |
33876071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 33880316 - 33880364
Alignment:
| Q |
150 |
ttacaaaaaataacatgaaattatgagaaaatt---tagggttaacatt |
195 |
Q |
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| T |
33880316 |
ttacgaaaaataacatgaaattatgagaaaattaagtagggttaacatt |
33880364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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