View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7836_high_4 (Length: 494)
Name: NF7836_high_4
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 22 - 482
Target Start/End: Original strand, 8244574 - 8245034
Alignment:
| Q |
22 |
ttgcattaaagatgattcttgttttgtaggcattggccaaaatggtgataactcgacaacttttcctattattagcagagttggtgactccaatccagta |
121 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8244574 |
ttgcattaaagatgattcttgtttcgtaggcattggccaaaatggtgataactcgacaacttttcctattattagcagagttggtgactccaatccagta |
8244673 |
T |
|
| Q |
122 |
gatgcaattttctcaggaaggtccttaagttctgcaaacacctgcatgattgcagataataatcagtcattgagatgaattcttgcttatcattcaactg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8244674 |
gatgcaattttctcaggaaggtccttaagttctgcaaacacctgcatgattgcagataataatcagtcattgagatgaattcttgcttatcattcaactg |
8244773 |
T |
|
| Q |
222 |
tcaacaacgaccattctgttaggatcctttctttgagtaagaaagaaatgccggaacagaacagtatttagtaatcataagaatgaagtttgcaaaagat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8244774 |
tcaacaacgaccattctgttaggatcctttctttgagtaagaaagaaatgccggaacagaacagtatttagtaatcataagaatgaagtttgcaaaagat |
8244873 |
T |
|
| Q |
322 |
taaccgttcgtaactattcagatgtatcctctcctctatcaattgaggcatattttgctaagaataaccaaattacaacaaaaatagtatactactatta |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8244874 |
taaccgttcgtaactattcagatgtatcctctcctctatcaattgaggcatattttgctaagaataaccaaattataacaaaaatagtatactactatta |
8244973 |
T |
|
| Q |
422 |
acatgtctatcaaccacgttaaaaaccaacaaaagaactaactaatttctctaaccactct |
482 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
8244974 |
acatgtctatcaaccacgttaaaaactaacaaaagaactaactaatttctctaacaactct |
8245034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 8190902 - 8191053
Alignment:
| Q |
29 |
aaagatgattcttgttttgtaggcattggccaaaatggtgataactcga--------caacttttcctattattagcagagttggtgactccaatccagt |
120 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
8190902 |
aaagatgattcttgttttgtaggaattggccaaaatggtgataactcgataactcaacaacttttcttattattagcagcgttggtgactccaatccagt |
8191001 |
T |
|
| Q |
121 |
agatgcaattttctcaggaaggtccttaagttctgcaaacacctgcatgatt |
172 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
8191002 |
agatgcatttttctcatgaaagtccttaagttctgcaaacacctgcgtgatt |
8191053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 233 - 320
Target Start/End: Original strand, 8191149 - 8191236
Alignment:
| Q |
233 |
cattctgttaggatcctttctttgagtaagaaagaaatgccggaacagaacagtatttagtaatcataagaatgaagtttgcaaaaga |
320 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| || ||||||||||| |||| ||| |||||| |
|
|
| T |
8191149 |
cattctattaggatcctttctttgagtaagaaagaaatctcagaacagaacagtattgagcaatcataagaaagaagattgtaaaaga |
8191236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 12833057 - 12833206
Alignment:
| Q |
23 |
tgcattaaagatgattcttgttttgtaggcattggccaaaatggtgataactcgacaacttttcctattattagcagagttggtgactccaatccagtag |
122 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12833057 |
tgcattaaacatgattcttgttttgtaggaattggccaaaatggtgataactcaacaacttttcctattattagcagtgttggtgactccaatccagtag |
12833156 |
T |
|
| Q |
123 |
atgcaattttctcaggaaggtccttaagttctgcaaacacctgcatgatt |
172 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12833157 |
acacaattttctcaggaaggtccttaagttctgcaaacacctacatgatt |
12833206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 40917007 - 40917077
Alignment:
| Q |
237 |
ctgttaggatcctttctttgagtaagaaagaaatgccggaacagaacagtatttagtaatcataagaatga |
307 |
Q |
| |
|
||||||||| | |||||||||||||||||||| | || |||||||||||| || |||| ||| |||||||| |
|
|
| T |
40917007 |
ctgttaggaccgtttctttgagtaagaaagaattcccagaacagaacagtcttgagtagtcaaaagaatga |
40917077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University