View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7836_high_5 (Length: 474)
Name: NF7836_high_5
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_high_5 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 20 - 454
Target Start/End: Complemental strand, 27443562 - 27443128
Alignment:
| Q |
20 |
ttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactgcataaagaaatacaaaat |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27443562 |
ttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaacaactgcataaagaaatacaaaat |
27443463 |
T |
|
| Q |
120 |
cactcatattagaattataaatgaatttattaagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagtt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27443462 |
cactcatattagaattataaatgaatttattaagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagtt |
27443363 |
T |
|
| Q |
220 |
gagtagtgatatatataccatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggcttgattaatcttgttttg |
319 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
27443362 |
gagtagtgatatatataccatagaagaggaatgcaaaactaaggcatagagcaacacgagtgcttgtcattttggatatggcttgatgaatcttgttttg |
27443263 |
T |
|
| Q |
320 |
caggcttgtgaatattttctctttcgattgtagtttgctgtttgaaggttattgatgaagttgttctctgcttcatgacatatatatatagccttctttt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
27443262 |
caggcttgtgaatattttctctttcgattgtagtttgctgtttgaaggtgattgatgaagttgttctctgcttcatgacataaatatatagccttcttct |
27443163 |
T |
|
| Q |
420 |
atcgatggtttgaatcttaattcaacgaatggtat |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
27443162 |
atcgatggtttgaatcttaattcaacgaatggtat |
27443128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 407
Target Start/End: Original strand, 27221301 - 27221668
Alignment:
| Q |
20 |
ttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactgcataaagaaatacaaaat |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |
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|
| T |
27221301 |
ttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaaagtcaccttagctcctccaaccactgcat------atacaaa-- |
27221392 |
T |
|
| Q |
120 |
cactcatattagaattataaatgaatttattaagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagtt |
219 |
Q |
| |
|
|| ||||||||||| |||||||| ||||| ||||| |||||||||| ||||||||||||| |||||||| ||||||||||||| |
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|
| T |
27221393 |
---------------tacaaatgaatttaataagcgcatgaagagaaattaacttagctaagtgaattgattaattatatggaa---aattaatgtagtt |
27221474 |
T |
|
| Q |
220 |
gagtagtgatatat----ataccatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggc--ttgattaatctt |
313 |
Q |
| |
|
||| |||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||| |||||| |
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|
| T |
27221475 |
atgtattgatatatgtacgtaccatagaagaggaatgcaaaactaaggcatagagcaacgcgggtgcttgtcattttggatatggcttttgatgaatctt |
27221574 |
T |
|
| Q |
314 |
gttttgcaggcttgtgaatattttctctttcgattgtagtttgctgtttgaaggttattgatgaagttgttctctgcttcatgacatatatata |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
27221575 |
gttttgcaggcttgtgaatattttctctttcgattgtagtttgctgtttgtaagtgattgatgaagttgttctctgcttcgtgacatatatata |
27221668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 20 - 458
Target Start/End: Original strand, 27433048 - 27433495
Alignment:
| Q |
20 |
ttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactgcataaagaaatacaaaat |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||||| |
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|
| T |
27433048 |
ttttggtctccagttaacgttcccggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccgctgcat--acaaatgcaaaat |
27433145 |
T |
|
| Q |
120 |
-cactcatattagaattataaatgaatttattaagcgcaagaagaaaaatttacttagctaaatg----aattgattaatcatatggaaattaattaatg |
214 |
Q |
| |
|
| ||||||||||| ||||||||||||||| | || ||||| ||| | | ||||||||| |||| ||||| |||||||| |||||||| |
|
|
| T |
27433146 |
acgttcatattagaagagcaaatgaatttattaaccacatgaagaggaataaaataagctaaatgaattaatttattaactatatggaa---aattaatg |
27433242 |
T |
|
| Q |
215 |
tagt----tgagtagtgatatata-taccatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggcttgattaa |
309 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||| |||||||| || |||| ||||| ||||||| | ||| | ||||||||||||| ||||||||| |
|
|
| T |
27433243 |
tagttgaatgagtactgatatatattaccatagaagaggaatgccaagctaaagcataaagcaacatgggtgttcttcattttggatatgacttgattaa |
27433342 |
T |
|
| Q |
310 |
tcttgttttgcaggcttgtg-----------aatattttctctttcgattgtag-tttgctgtttgaaggttattgatgaagttgttctctgcttcatga |
397 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||| ||| ||||||||| ||| |||||||||| ||| |
|
|
| T |
27433343 |
tcttgttttgcaggcttgtgaatattggtgcaatattttctctttcaattgtagtttttctgttt---ggtgattgatgaaattgctctctgcttcttga |
27433439 |
T |
|
| Q |
398 |
catatatatatagccttcttttatcgatggtttgaatcttaattcaacgaatggtattcat |
458 |
Q |
| |
|
| ||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27433440 |
c--atatatatagcctac---tatggatggtttgaatcttaattcaacgaatggtattcat |
27433495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 27215339 - 27215633
Alignment:
| Q |
20 |
ttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactgcataaagaaatacaaaat |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
27215339 |
ttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaaccactgcat------atacaaa-- |
27215430 |
T |
|
| Q |
120 |
cactcatattagaattataaatgaatttattaagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagtt |
219 |
Q |
| |
|
|| ||||||||||| |||||||| ||||| ||||| |||||||||| ||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
27215431 |
---------------tacaaatgaatttagtaagcgcatgaagagaaattaacttagctaagtgaattgattaattatatggaa---aattaatgtagtt |
27215512 |
T |
|
| Q |
220 |
gagtagtgatatat----ataccatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggc--ttgattaatctt |
313 |
Q |
| |
|
||| |||||||| |||| ||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
27215513 |
atgtattgatatatgtacgtaccgtagaagaggaatgcaaaactaaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatctt |
27215612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 27207968 - 27208225
Alignment:
| Q |
20 |
ttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactgcataaagaaatacaaaat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||| |
|
|
| T |
27207968 |
ttttggtctccagttaacgttcctggccatacagtgtatgcacacctatttgtgaatgtcaccttagctcctccaaccactgcat--acaaatgaaaaat |
27208065 |
T |
|
| Q |
120 |
-cactcatattagaattataaatgaatttattaagcgcaagaagaaaaatttacttagctaaatgaatt----gattaatcatatggaaattaattaatg |
214 |
Q |
| |
|
| ||||||||||| ||||||||||||||| | || ||||| |||| ||| ||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
27208066 |
acgttcatattagaagagcaaatgaatttattaaccacatgaagagaaataaactaagctaaatgaattaatggattaactatatggaa---aattaatg |
27208162 |
T |
|
| Q |
215 |
tagttgagtagtgatatatataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
277 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||| |||| ||||| ||||||||| |
|
|
| T |
27208163 |
tagttgagtactgatatatataccatagaagaggaatgcaaagctaaagcataaagcaacacg |
27208225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 334 - 416
Target Start/End: Original strand, 27208270 - 27208352
Alignment:
| Q |
334 |
ttttctctttcgattgtagtttgctgtttgaaggttattgatgaagttgttctctgcttcatgacatatatatatagccttct |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||| ||||| |||| |||||||||||||||||||||| |
|
|
| T |
27208270 |
ttttctctttcgattgtagtttgctgtttgaaagtgattgatgaagtttctctcttcttcttgacatatatatatagccttct |
27208352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 27410236 - 27410303
Alignment:
| Q |
38 |
gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactgcata |
105 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||| |||||||||||||| ||||||||||| |||||||| |
|
|
| T |
27410236 |
gttcctggccatacagtatatccacatctattcgtgaatgtcaccttggctcctccaaccactgcata |
27410303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 27415821 - 27415763
Alignment:
| Q |
38 |
gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaac |
96 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
27415821 |
gttcctggccatacagtgtatacacatctattcgtgaatgtcaccttggctcctccaac |
27415763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 27455196 - 27455277
Alignment:
| Q |
20 |
ttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactg |
101 |
Q |
| |
|
|||| ||||| |||||||||| || | |||||| | ||||||||| |||| |||||||||||||||||||||||||| |||| |
|
|
| T |
27455196 |
tttttgtctctagttaacgtttctagtcatacaatttattcacacttattggtgaatgtcaccttagctcctccaactactg |
27455277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 450
Target Start/End: Original strand, 27215653 - 27215758
Alignment:
| Q |
341 |
tttcgattgtagtttgctgtttgaaggttatt-gatgaagttgttctctgcttcatgacatatatatatagccttcttttatcgatggtttgaatcttaa |
439 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||| |||||||||| |||||||||| | ||||||||||| | || ||||||||||||||||| | | |
|
|
| T |
27215653 |
tttcgattgtagtttgttgtgtgaaggtgatttgatgaagttgctctctgcttctttacatatatataga-----tttctatcgatggtttgaatcgtca |
27215747 |
T |
|
| Q |
440 |
ttcaacgaatg |
450 |
Q |
| |
|
||||||||||| |
|
|
| T |
27215748 |
ttcaacgaatg |
27215758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 27389262 - 27389347
Alignment:
| Q |
20 |
ttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactgcata |
105 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||| |||| ||||| |||||||| ||| | ||||||| | || ||||||| |
|
|
| T |
27389262 |
ttttggtctccggttaaggttcctggccatacggtgtatccacatctattcgtgaatgttaccgtggctcctctagcagctgcata |
27389347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 27390259 - 27390304
Alignment:
| Q |
232 |
atataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
277 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
27390259 |
atataccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27390304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 27410494 - 27410539
Alignment:
| Q |
232 |
atataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
277 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
27410494 |
atataccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27410539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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