View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7836_high_6 (Length: 430)
Name: NF7836_high_6
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 30393772 - 30393359
Alignment:
| Q |
1 |
catgtgcaccctctcttgatcatacaagtacctcacacactccaccatcaccatcacaatccatctatcaatgtgtcatgcaaaatttcccttcataatc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393772 |
catgtgcaccctctcttgatcatgcaagtacctcacacactccaccatcaccatcacaatccatctatcaatgtgtcatgcaaaatttcccttcataatc |
30393673 |
T |
|
| Q |
101 |
tcatttttatagctattagcaacaacaggttttggttttcttagttttggaaggtctttagccaattattgtcattttaaattttctagatactcattga |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393672 |
tcatttttatagctattagaaacaacaggttttggttttcttagttttggaaggtctttagccaattattgtcattttaaattttctagatactcattga |
30393573 |
T |
|
| Q |
201 |
aacaaactctagtgtctttatataaattccataccaacattttgttactagttcttggtatggtaggttaatctcttttgtcatatcattgttgttgttt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393572 |
aacaaactctagtgtctttatataaattccataccaacattttgttactagttcttggtatggtaggttaatctcttttgtcatatcattgttgttgttt |
30393473 |
T |
|
| Q |
301 |
aaaatgccttgtgtattttttgaaacaattgaacaaagtatggtgttcttcgcataccagtacttgtaacaagttattggtaggtgattctgttacttta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30393472 |
aaaatgccttgtgtattttttgaaacaattgaacaaagtatggtgttcttcgcataccagtacttgtaactagttattggtaggtgattctgttacttta |
30393373 |
T |
|
| Q |
401 |
ataaaatctatatt |
414 |
Q |
| |
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|||||||||||||| |
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| T |
30393372 |
ataaaatctatatt |
30393359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 30407366 - 30407125
Alignment:
| Q |
1 |
catgtgcaccctctcttgatcatacaagtacctcacacactccaccatcaccatcacaatccatctatcaatgtgtcatgcaaaatttcccttcataatc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30407366 |
catgtgcaccctctcttgatcatgcaagtacctcacacactccaccatcaccatcacaatccatctatcaatgtgtcatgcaaaatttcccttcataatc |
30407267 |
T |
|
| Q |
101 |
tcatttttatagctattagcaacaacaggttttggttttcttagttttggaaggtctttagccaattattgtcattttaaattttctagatactcattga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
30407266 |
tcatttttatagctattagcaacaacaggttttggttttcttagttttggaaggtctttagccaatcattatcattttaaattttctagatactcattga |
30407167 |
T |
|
| Q |
201 |
aacaaactctagtgtctttatataaattccataccaacattttg |
244 |
Q |
| |
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||| || |||||||||||||| || ||||||||||| |||||| |
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| T |
30407166 |
aac--acactagtgtctttatacaatttccataccaatattttg |
30407125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30393826 - 30393779
Alignment:
| Q |
1 |
catgtgcaccctctcttgatcatacaagtacctcacacactccaccat |
48 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
30393826 |
catgtgcaccctctcttgatcatgcaagtacctcacacactccaccat |
30393779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30407420 - 30407373
Alignment:
| Q |
1 |
catgtgcaccctctcttgatcatacaagtacctcacacactccaccat |
48 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
30407420 |
catgtgcaccttctcttgatcatgcaagtacctcacacactccaccat |
30407373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 398
Target Start/End: Complemental strand, 30407080 - 30407044
Alignment:
| Q |
362 |
acttgtaacaagttattggtaggtgattctgttactt |
398 |
Q |
| |
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||||||||| |||||||||||||||||| |||||||| |
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|
| T |
30407080 |
acttgtaactagttattggtaggtgattttgttactt |
30407044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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