View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7836_low_1 (Length: 675)
Name: NF7836_low_1
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 21212191 - 21212479
Alignment:
| Q |
16 |
ggcccgctttttcaggggactaaatggcatggggcaactataaggggtaggttcaaaacctcggcccatgtagcctaaaatgacgaggtaaacggattga |
115 |
Q |
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| T |
21212191 |
ggcccgcttcttcaggggactaaatggtacaaggcaactataacgggtaggttcaaaacctcggcccatctagcctaagatgacgaggtaaaccgactga |
21212290 |
T |
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| Q |
116 |
cccgaaggatcatacccgttttatcactcgtatccatcattattgagagttgcttttttgacccctcaatatctctataagttgaaaaagaaaatatatt |
215 |
Q |
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| T |
21212291 |
cccgagggatcatccccgttttgtcactcgtatccatcattattgggagttgcttttttgacccatcaatatctctataagttgaaaaagaaaatatatt |
21212390 |
T |
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| Q |
216 |
caagattatctacaaaaggttttaaaactgtaaaaatatcttttgaaaacgatgttggtgtgaaaaatgaaacataaactccattaata |
304 |
Q |
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| T |
21212391 |
caaggttatccatagaaggtcttaaaactgtaaaaatatcttttggaaacgatgttagtgtgaaaaatgaaacataaactccattaata |
21212479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 304 - 483
Target Start/End: Original strand, 21212575 - 21212754
Alignment:
| Q |
304 |
agagagagaaaaagcttgaaggagaagaaaacttcattctcattataatatctcacacaaaaactaactttacaagtattgtaggaagagtatatatagc |
403 |
Q |
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| T |
21212575 |
agagagagagagagcttgaaggagaagaaaacttcattctcattataatatctcacacaaaaactaactttacaagtagtgtaggaagagtatatatagc |
21212674 |
T |
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| Q |
404 |
acttgtatctctgtaactaacgactaaccctaattacttctataactaactatgattcgaaaacaattataaggagttaa |
483 |
Q |
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| T |
21212675 |
acttgtatctctgtaactaacgactaaccctaattacttttataactaactatgattcgaaaacagttataaggagttaa |
21212754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 489 - 661
Target Start/End: Original strand, 21212811 - 21212983
Alignment:
| Q |
489 |
tcaagctggaatgaatgaatgttaatcatgtcaagcttgtgatgtagaatgttgaaagattttgggtaaagtgatttagtcaaaatatatgccatttgtt |
588 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||||||| ||||| |
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| T |
21212811 |
tcaagttggaatgaatgaatgtgaatcatgtcaagcttgtgatgtagaatgttgaaaggtttggggtcaactgatttagtcaaaatatatgccacttgtt |
21212910 |
T |
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| Q |
589 |
ctttggaagaaaatggtagcaggtgaagcatgcctgtttggatcttgtctcttaccacatatcagtctatatt |
661 |
Q |
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| T |
21212911 |
ctttggaagaaaatggtagcaagtgaagcatgcctgtttggatcttgtctcttaccacatgccaatctatatt |
21212983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 562 - 648
Target Start/End: Original strand, 20843588 - 20843674
Alignment:
| Q |
562 |
atttagtcaaaatatatgccatttgttctttggaagaaaatggtagcaggtgaagcatgcctgtttggatcttgtctcttaccacat |
648 |
Q |
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| T |
20843588 |
atttagtcaatatatctgccacttgctctttggaagaaactggtagtaggtgatgtatgcttgtttggatcttgtctcttaccacat |
20843674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 20842609 - 20842667
Alignment:
| Q |
307 |
gagagaaaaagcttgaaggagaagaaaacttcattctcattataatatctcacacaaaa |
365 |
Q |
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| T |
20842609 |
gagagaaaaagcttgaagaaggagaaaagtttattctcactataatgtctcatacaaaa |
20842667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 307 - 457
Target Start/End: Complemental strand, 28751325 - 28751175
Alignment:
| Q |
307 |
gagagaaaaagcttgaaggagaagaaaacttcattctcattataatatctcacacaaaaactaactttacaagtattgtaggaagagtatatatagcact |
406 |
Q |
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| T |
28751325 |
gagagaaaaaacttgaaggagaagaaaacttcattctcattttaatatttcacacaaaaactaactttacaagtagtataggaagagcatatatagcact |
28751226 |
T |
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| Q |
407 |
tgtatctctgtaactaacgactaaccctaattacttctataactaactatg |
457 |
Q |
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| T |
28751225 |
tgtatctctataattgtcaactaaccctagttagttctacaactaactatg |
28751175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 642
Target Start/End: Complemental strand, 28750360 - 28750217
Alignment:
| Q |
501 |
gaatgaatgttaatcatgtcaagcttgtgatgtagaatgttgaaagattttgggtaaagtgatttagtcaaaatatat--gccatttgttctttggaaga |
598 |
Q |
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| T |
28750360 |
gaatgaatctcaatcatgccaagcttgtgttgtaaaatgttgaaaggtccaaggtgaagttatttggtaaatatatatatgccacttgttctttggaaga |
28750261 |
T |
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| Q |
599 |
aaatggtagcaggtgaagcatgcctgtttggatcttgtctctta |
642 |
Q |
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| T |
28750260 |
aaccggtattaggtgaagcatgcttgttgaaatcttgtctctta |
28750217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 501 - 648
Target Start/End: Complemental strand, 46655462 - 46655315
Alignment:
| Q |
501 |
gaatgaatgttaatcatgtcaagcttgtgatgtagaatgttgaaagattttgggtaaagtgatttagtcaaaatatatgccatttgttctttggaagaaa |
600 |
Q |
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||||| |||| |||||||||||||||||| |||||||||||||||| | |||| || ||||||||||| || | ||||| ||| ||||| ||||||| |
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| T |
46655462 |
gaatggatgtcaatcatgtcaagcttgtgctgtagaatgttgaaaggtccagggtggagagatttagtcaatatgtctgccacttgctcttttgaagaaa |
46655363 |
T |
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| Q |
601 |
atggtagcaggtgaagcatgcctgtttggatcttgtctcttaccacat |
648 |
Q |
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| T |
46655362 |
ctggtaaaagatgaagcatgcctgtttggattttgtctcttactacat |
46655315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 288 - 365
Target Start/End: Original strand, 2673629 - 2673704
Alignment:
| Q |
288 |
cataaactccattaatagagagagaaaaagcttgaaggagaagaaaacttcattctcattataatatctcacacaaaa |
365 |
Q |
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|||||||||||||||| ||| ||| | ||||||||||||||||||||| ||||||||| |||||| |||||||||| |
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| T |
2673629 |
cataaactccattaatggaggaagaga--gcttgaaggagaagaaaactttattctcattgtaatatttcacacaaaa |
2673704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 365
Target Start/End: Complemental strand, 5298495 - 5298452
Alignment:
| Q |
322 |
aaggagaagaaaacttcattctcattataatatctcacacaaaa |
365 |
Q |
| |
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|||||||||||||||| ||||||||| |||||| |||||||||| |
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| T |
5298495 |
aaggagaagaaaactttattctcattgtaatatttcacacaaaa |
5298452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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