View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7836_low_11 (Length: 403)
Name: NF7836_low_11
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 28738658 - 28738453
Alignment:
| Q |
17 |
tataaaaaatagtaaaccttacatataactaatcatagcataaaacaatgttattattatggttatttagagagataaatgtcaaattatatttcaaacc |
116 |
Q |
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| T |
28738658 |
tataacaaatagtaaaccttacatataactaatcatagcataaaacaatgttattattatggttatatagagagataaatgtcaaattatatttcaaacc |
28738559 |
T |
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| Q |
117 |
tacatggctttctatttgatactttaaaacctacatggctcttgtctaaacttgtctctgcagtttctgtcgttgaagtttgaatgtttgagcggtttga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28738558 |
tacatggctttctatttgatactttaaaacctacatggatcttgtctaaacttgtctctgcagtttctttcgttgaagtttgaatgtttgagcggtttga |
28738459 |
T |
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| Q |
217 |
ttcttc |
222 |
Q |
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|||||| |
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| T |
28738458 |
ttcttc |
28738453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 254 - 387
Target Start/End: Complemental strand, 28738410 - 28738277
Alignment:
| Q |
254 |
cgagtgttgcttcctcttcatattcattgtgagcagcttgcaaaggccgtgaagttatatgttcacccttaccactgtttgacttccccttttcttccgg |
353 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28738410 |
cgagtgtagcttcctcttcatattcatcgtgagcagcttgcaaaggccgtgaagttatatgttcacccttaccactgtttgacttccccttttctttcgg |
28738311 |
T |
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| Q |
354 |
ttggataatcatgtattcataaacttctcttttt |
387 |
Q |
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| T |
28738310 |
ttggataatcatgtattcataaacttctcttttt |
28738277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 268 - 387
Target Start/End: Original strand, 21848544 - 21848663
Alignment:
| Q |
268 |
tcttcatattcattgtgagcagcttgcaaaggccgtgaagttatatgttcacccttaccactgtttgacttccccttttcttccggttggataatcatgt |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| || ||||||||||| ||||||||| |
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| T |
21848544 |
tcttcatattcattgtgagcagcttgcaaaggccgtgaagttatatgttcacccttaccactgtttgaatttcccattccttccggttgggtaatcatgt |
21848643 |
T |
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| Q |
368 |
attcataaacttctcttttt |
387 |
Q |
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|||||||||||||||||||| |
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| T |
21848644 |
attcataaacttctcttttt |
21848663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 255 - 383
Target Start/End: Original strand, 31999590 - 31999718
Alignment:
| Q |
255 |
gagtgttgcttcctcttcatattcattgtgagcagcttgcaaaggccgtgaagttatatgttcacccttaccactgtttgacttccccttttcttccggt |
354 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| ||||||||||||||| ||||||||||| ||||||| | || |
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| T |
31999590 |
gagtgttgcttcctcttcatattcatcgtgagcagctttcaaatgctgtgaagttatattttcacccttaccactttttgacttccctttttctttctgt |
31999689 |
T |
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| Q |
355 |
tggataatcatgtattcataaacttctct |
383 |
Q |
| |
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||| |||||||||||||||||||||||| |
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| T |
31999690 |
tgggcaatcatgtattcataaacttctct |
31999718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 31998461 - 31998507
Alignment:
| Q |
127 |
tctatttgatactttaaaacctacatggctcttgtctaaacttgtct |
173 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31998461 |
tctatttgatactttaaaatctacatggctcttgtctaaacttgtct |
31998507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 31998861 - 31998914
Alignment:
| Q |
172 |
ctctgcagtttctgtcgttgaagtttgaatgtttgagcggtttgattcttccac |
225 |
Q |
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|||||||||||| || ||||||| | |||||||||| |||| |||||||||||| |
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| T |
31998861 |
ctctgcagtttcagtggttgaagctcgaatgtttgaacggtctgattcttccac |
31998914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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