View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7836_low_12 (Length: 403)
Name: NF7836_low_12
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 384
Target Start/End: Original strand, 2706403 - 2706768
Alignment:
| Q |
14 |
gaagaagaggggggagggaaaaatactgagaaagaaataaagggaaggatgggaactatagcgttggtggaagagagatggttagggaaatatattgcag |
113 |
Q |
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| T |
2706403 |
gaagaagaggggg-aggaaaaaatattgagaaagaaataaagggaaggacgggaactatagcgttggtggaagagagatggttagggaaatatttttcag |
2706501 |
T |
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| Q |
114 |
gctcttctaatggtttgtttgttaggttggctcataactctattatcatcaaattcacatgacaaaattattttttgaagtaattttctctgcaaattgg |
213 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
2706502 |
gctcttctaatggtttgtttgttaggtttgctcataattctactatcatcaaattcacatgacaaaattatttttttaagtaattttctctgcaaactgg |
2706601 |
T |
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| Q |
214 |
agtttcagcatttctttagtatgttttactaagaggcccccttttaaacgttgcatcannnnnnnnnngttcatttgatcataccaacatttgtctcatc |
313 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
2706602 |
agtttcggcatttctttagtatgttttactaagaggctcccttttaaaccttgcat--ttttttttttgttcatttgatcataccaacatttgtctcatc |
2706699 |
T |
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| Q |
314 |
aagttcatttcatatgcctccttttatcaatcggatacgtgttgtaatattgttaaatagatagagtacac |
384 |
Q |
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| T |
2706700 |
aagttcatttc--atgcctccttttaccaatcggatacgtgttgtaatattgtgaaatagatagagtacac |
2706768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 14764343 - 14764221
Alignment:
| Q |
14 |
gaagaagaggggggagggaaaaatactgagaaagaaataaagggaaggatgggaactatagcgttggtggaagagagatggttagggaaatatattgcag |
113 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |
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| T |
14764343 |
gaagaagaggggggagggaaaaatattgagaaagaaataaagggaaggatgggaactataacgatggtggaagagagatggttagggaaatattttgcag |
14764244 |
T |
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| Q |
114 |
gctcttctaatggtttgtttgtt |
136 |
Q |
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|| |||||||||||||||||||| |
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| T |
14764243 |
gcccttctaatggtttgtttgtt |
14764221 |
T |
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