View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7836_low_17 (Length: 349)

Name: NF7836_low_17
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7836_low_17
NF7836_low_17
[»] chr4 (16 HSPs)
chr4 (61-302)||(31529060-31529301)
chr4 (84-239)||(31030343-31030498)
chr4 (84-330)||(31488935-31489181)
chr4 (84-239)||(31020462-31020617)
chr4 (86-330)||(31496292-31496536)
chr4 (87-330)||(31159773-31160016)
chr4 (84-330)||(31501460-31501706)
chr4 (70-246)||(31150959-31151135)
chr4 (84-257)||(31482186-31482362)
chr4 (203-330)||(31163531-31163658)
chr4 (70-168)||(31476336-31476434)
chr4 (1-62)||(31035053-31035110)
chr4 (204-276)||(31244507-31244579)
chr4 (204-235)||(31162245-31162276)
chr4 (204-330)||(31476470-31476596)
chr4 (107-164)||(31162316-31162375)
[»] chr6 (16 HSPs)
chr6 (88-257)||(12781322-12781491)
chr6 (88-257)||(12782073-12782242)
chr6 (119-265)||(33060120-33060266)
chr6 (88-257)||(12785512-12785681)
chr6 (100-257)||(31566474-31566631)
chr6 (119-256)||(33361072-33361209)
chr6 (121-330)||(33288075-33288284)
chr6 (118-264)||(33641985-33642131)
chr6 (100-257)||(33265455-33265612)
chr6 (100-257)||(33274599-33274756)
chr6 (197-257)||(9169431-9169491)
chr6 (198-329)||(33390574-33390705)
chr6 (206-257)||(12786252-12786303)
chr6 (198-257)||(33403184-33403243)
chr6 (118-257)||(33307059-33307198)
chr6 (84-257)||(33412491-33412664)
[»] chr2 (1 HSPs)
chr2 (100-257)||(17438039-17438196)
[»] scaffold1749 (1 HSPs)
scaffold1749 (100-257)||(719-876)
[»] scaffold0428 (1 HSPs)
scaffold0428 (100-257)||(9480-9637)
[»] chr8 (1 HSPs)
chr8 (121-166)||(6473158-6473203)
[»] chr5 (2 HSPs)
chr5 (209-242)||(16466056-16466089)
chr5 (212-248)||(500125-500161)


Alignment Details
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 61 - 302
Target Start/End: Complemental strand, 31529301 - 31529060
Alignment:
Q  61 gaatctgttgcacctgaactgcatcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgag 160  Q
    |||||| | ||||||||||| | |||||| || ||||||||||    ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |    
T  31529301 gaatctatagcacctgaactccttcgtgctatcgaagcctctcggactttcattgttgtcttctcaaacaactatgcttcctcaacttggtgcttgcggg 31529202  T
Q  161 aattggaaaagattcttgaatgcagtcaactatattgaaaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtggaaa 260  Q
    ||||| || | || ||| | |||   ||||| | | ||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| |     
T  31529201 aattgcaatacatccttcattgcgtacaactttctggaaaacgtgttctccctgttttctatgatgttgatccttccgaggtgcgaaagcaaagtgggag 31529102  T
Q  261 ttataaaatagcctttgctgaacatgaggaaacattcaaaca 302  Q
    |||||||| ||| |||||  |||||||||||| |||||||||    
T  31529101 ttataaaaaagcatttgcccaacatgaggaaagattcaaaca 31529060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 84 - 239
Target Start/End: Complemental strand, 31030498 - 31030343
Alignment:
Q  84 tcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgc 183  Q
    ||||||||||||||  ||||| |||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| | | || ||||| |||    
T  31030498 tcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattggtacacatccttgactgc 31030399  T
Q  184 agtcaactatattgaaaacgtgttctgcctgttttctatgatgttgatccttctga 239  Q
    |||||| | | | ||| ||||||||| |||||||| ||||||||||||||||||||    
T  31030398 agtcaagtttctggaagacgtgttcttcctgttttttatgatgttgatccttctga 31030343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 84 - 330
Target Start/End: Original strand, 31488935 - 31489181
Alignment:
Q  84 tcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgc 183  Q
    ||||||||||||||  ||||| |||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||| | || ||| | | |    
T  31488935 tcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattggaatacatccttcactac 31489034  T
Q  184 agtcaactatattgaaaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtggaaattataaaatagcctttgctgaac 283  Q
    |||||| | | | ||| ||||||||| |||||||| |||||||||||||||||||| ||| || | ||||  |||| |||      ||||||| |  |||    
T  31489035 agtcaagtttttggaagacgtgttcttcctgttttttatgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaac 31489134  T
Q  284 atgaggaaacattcaaacatgactctcaaatggtgcaaagatggagg 330  Q
    ||||  |||||||| |||||||||||||  |||| ||||||||||||    
T  31489135 atgaacaaacattccaacatgactctcatgtggtacaaagatggagg 31489181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 84 - 239
Target Start/End: Complemental strand, 31020617 - 31020462
Alignment:
Q  84 tcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgc 183  Q
    ||||||||||||||  ||||| |||||||||| |||| |||| ||||||||| |||||||||||||||||||||||||||||| | | || ||||| |||    
T  31020617 tcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactattcttcctcaacttggtgcttgcgagaattggtacacatccttgactgc 31020518  T
Q  184 agtcaactatattgaaaacgtgttctgcctgttttctatgatgttgatccttctga 239  Q
    |||||| | | | ||| ||||||||| |||||||| ||||||||||||||||||||    
T  31020517 agtcaagtttctggaagacgtgttcttcctgttttttatgatgttgatccttctga 31020462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 86 - 330
Target Start/End: Original strand, 31496292 - 31496536
Alignment:
Q  86 gtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcag 185  Q
    |||||||||||  |||||| |||||  |||||||||| ||||  |||||||||| |||||||| |||||||| |||||| |||||||| ||||||||  |    
T  31496292 gtgcaattgaaaactctcaggtttttgttgtggtcttatcaaggaactatgctttctcaacttcgtgcttgcaagaattagaaaagatccttgaatg-gg 31496390  T
Q  186 tcaa-ctatattgaaaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtggaaattataaaatagcctttgctgaaca 284  Q
    ||||  ||| |  ||||| ||||||||||||||||||||||||||| ||||||   ||||||||||||||||||| ||||     ||| ||||   ||||    
T  31496391 tcaaggtatctaaaaaacatgttctgcctgttttctatgatgttgacccttctatggtgcgaaagcaaagtggaatttatggtgaagcatttgtcaaaca 31496490  T
Q  285 tgaggaaacattcaaacatgactctcaaatggtgcaaagatggagg 330  Q
    |||  ||| |||| |||| |||||||| ||||||||||||||||||    
T  31496491 tgaacaaagattccaacaagactctcagatggtgcaaagatggagg 31496536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 330
Target Start/End: Complemental strand, 31160016 - 31159773
Alignment:
Q  87 tgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagt 186  Q
    |||||||||||||||  | ||||| |||||  |||||||||||||||||||||||||||| |||||||||||||| |||||| | || ||| | ||||||    
T  31160016 tgcaattgaagcctcaaaggtttttattgtactcttctcaaaaaactatgcttcctcaacatggtgcttgcgagagttggaatacatccttcactgcagt 31159917  T
Q  187 caactatattgaaaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtggaaattataaaatagcctttgctgaacatg 286  Q
    ||| | | | |||  |||||||| ||| ||||||||||||||||||||||||| ||| || | |||| ||||| ||||  |  |||| ||||  |||| |    
T  31159916 caagtttctggaactcgtgttctccctattttctatgatgttgatccttctgaggtgagacatcaaaatggaagttatggagaagcccttgccaaacacg 31159817  T
Q  287 aggaaacattcaaacatgactctcaaatggtgcaaagatggagg 330  Q
    | |||| |||| ||||||| ||  | ||||| ||||||||||||    
T  31159816 aagaaagattccaacatgaatcagagatggtacaaagatggagg 31159773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 84 - 330
Target Start/End: Original strand, 31501460 - 31501706
Alignment:
Q  84 tcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgc 183  Q
    ||||||||||||||  ||| || ||||  ||| |||| ||||||  |||||||||||||||| ||||||||||| |||||| |||||||| |||||||||    
T  31501460 tcgtgcaattgaagattcttatatttttgttgcggtcctctcaaggaactatgcttcctcaatttggtgcttgcaagaattagaaaagatccttgaatgc 31501559  T
Q  184 agtcaac-tatattgaaaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtggaaattataaaatagcctttgctgaa 282  Q
     ||| || ||| |  ||||| ||||||||||||||||||||||||||||||| | |  ||||||||||||||||| | ||||     ||| ||||   ||    
T  31501560 -gtccacgtatctaaaaaacatgttctgcctgttttctatgatgttgatcctcccgtggtgcgaaagcaaagtgggatttattgtgaagcatttgtcaaa 31501658  T
Q  283 catgaggaaacattcaaacatgactctcaaatggtgcaaagatggagg 330  Q
    |||||  ||| |||| |||| |||||||| ||||||| ||||||||||    
T  31501659 catgaacaaatattccaacaagactctcagatggtgctaagatggagg 31501706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 31151135 - 31150959
Alignment:
Q  70 gcacctgaactgcatcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaa 169  Q
    ||||||||||| | ||| |||||||||| ||||||  ||||  ||||||| ||||| || |||||||||||||||  |||||| ||||||||||||||      
T  31151135 gcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaactatgcttcctcagtttggtgtttgcgagaattggagt 31151036  T
Q  170 agattcttgaatgcagtcaactatattgaaaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcga 246  Q
      || ||| || ||  |||||||| | ||||||||||||||||||| ||||||||||||||||| || || ||||||    
T  31151035 gcatacttcaaagctttcaactatctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcga 31150959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 257
Target Start/End: Original strand, 31482186 - 31482362
Alignment:
Q  84 tcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaaga---ttcttgaa 180  Q
    |||||||||||||| ||||||  ||||||| |||||||| || || |  |||||||||||||||||||||||||| ||||||| | | |   ||||| |     
T  31482186 tcgtgcaattgaagtctctcagattttcatcgtggtcttgtctaagagttatgcttcctcaacttggtgcttgcgtgaattggtatacatccttcttcac 31482285  T
Q  181 tgcagtcaactatattgaaaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
    |||||||||| ||    ||||||||||| | ||||||||||||||||  |||| ||||| || ||||||||||||||    
T  31482286 tgcagtcaaccatcagaaaaacgtgttcggactgttttctatgatgtcaatccatctgaggtacgaaagcaaagtgg 31482362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 330
Target Start/End: Complemental strand, 31163658 - 31163531
Alignment:
Q  203 gtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtggaaattataaaatagcctttgctgaacatgaggaaacattcaaaca 302  Q
    ||||||||||| |||||||||| ||||||| |||||| ||||||||| |||||   ||||||     |||||||| | ||||| | ||||||||||||||    
T  31163658 gtgttctgcctattttctatgaagttgatctttctgaggtgcgaaagtaaagtcagaattatggtgaagcctttgttaaacataaagaaacattcaaaca 31163559  T
Q  303 tgactctcaaatggtgcaaagatggagg 330  Q
    ||||||| | ||||| ||| ||||||||    
T  31163558 tgactctgacatggttcaatgatggagg 31163531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 31476336 - 31476434
Alignment:
Q  70 gcacctgaactgcatcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaa 168  Q
    |||||||||||   || |||||||||||  ||||| |||||| |||||||||| ||||| ||||| |||| ||||||||||||||||  ||||||||||    
T  31476336 gcacctgaactctttcatgcaattgaagggtctcaggttttcgttgtggtcttgtcaaagaactacgctttctcaacttggtgcttgaaagaattggaa 31476434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31035110 - 31035053
Alignment:
Q  1 agttttaataaatatatagttgagacttgagtgagatgtacaacttagcttatcagtaagga 62  Q
    |||||||||||||||||||||||||||    ||||||| |||||||||||||| ||||||||    
T  31035110 agttttaataaatatatagttgagact----tgagatgcacaacttagcttataagtaagga 31035053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 31244507 - 31244579
Alignment:
Q  204 tgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtggaaattataaaatagccttt 276  Q
    |||||| ||| ||||||||||||| ||||| ||||| |||||||||||||| ||| ||||| ||| |||||||    
T  31244507 tgttctacctattttctatgatgtggatccatctgaggtgcgaaagcaaagcggagattatgaaaaagccttt 31244579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 235
Target Start/End: Complemental strand, 31162276 - 31162245
Alignment:
Q  204 tgttctgcctgttttctatgatgttgatcctt 235  Q
    ||||||||||||||||||||||||||||||||    
T  31162276 tgttctgcctgttttctatgatgttgatcctt 31162245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 330
Target Start/End: Original strand, 31476470 - 31476596
Alignment:
Q  204 tgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtggaaattataaaatagcctttgctgaacatgaggaaacattcaaacat 303  Q
    |||||| ||||| |||||||||||||||||||||   ||||||||||||| ||| | |||||    ||| ||||   ||||||   | | |||||||||     
T  31476470 tgttctacctgtgttctatgatgttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatggacacagattcaaacaa 31476569  T
Q  304 gactctcaaatggtgcaaagatggagg 330  Q
    |||||||||||||||| | ||||||||    
T  31476570 gactctcaaatggtgctacgatggagg 31476596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 31162375 - 31162316
Alignment:
Q  107 ttttcattgtggtcttctcaaaaaactatgcttcctcaac--ttggtgcttgcgagaatt 164  Q
    ||||||||||||| || || || |||||||||||||||||  ||||||||||| ||||||    
T  31162375 ttttcattgtggtattttctaagaactatgcttcctcaactattggtgcttgcaagaatt 31162316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 88 - 257
Target Start/End: Complemental strand, 12781491 - 12781322
Alignment:
Q  88 gcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagtc 187  Q
    ||||||||||||||||| |||| |||||| || ||||| || ||||||||||||||||||||||| ||||||||||||||| | || ||| | ||||||     
T  12781491 gcaattgaagcctctcaggtttacattgttgtattctctaagaactatgcttcctcaacttggtgtttgcgagaattggaatacatccttcattgcagta 12781392  T
Q  188 aactatattgaaaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
    ||  | || ||||||  ||||| ||||||||||||||||||||||||||||| || | ||||||||||||    
T  12781391 aaaaacatggaaaacacgttcttcctgttttctatgatgttgatccttctgaggtacaaaagcaaagtgg 12781322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 88 - 257
Target Start/End: Complemental strand, 12782242 - 12782073
Alignment:
Q  88 gcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagtc 187  Q
    |||||||||| |||||| ||||||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| | | | || ||| | ||||||     
T  12782242 gcaattgaaggctctcaggttttcattgttgtattctctaaaaactatgcttcttcaacttggtgtttgcgagaattagcatacatccttaactgcagtg 12782143  T
Q  188 aactatattgaaaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
     | | ||| ||||||| |||||||||||||| ||||||||||||| |||||| |||||||||||||||||    
T  12782142 tattgtatggaaaacgcgttctgcctgttttttatgatgttgatctttctgaggtgcgaaagcaaagtgg 12782073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 265
Target Start/End: Complemental strand, 33060266 - 33060120
Alignment:
Q  119 tcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagtcaactatattgaaaacgtgttctgcctgtttt 218  Q
    |||||||||| ||||||||||||||||| |||||||||| |||||| ||||||||   |||||||| | |    |   |||||| |||||| ||||||||    
T  33060266 tcttctcaaagaactatgcttcctcaacgtggtgcttgcaagaattagaaaagatatgtgaatgcattaaggggtcgggaaaacatgttcttcctgtttt 33060167  T
Q  219 ctatgatgttgatccttctgatgtgcgaaagcaaagtggaaattata 265  Q
    ||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  33060166 ctatgatgttgatccttctgaggtgcggaagcaaagtggaatttata 33060120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 257
Target Start/End: Complemental strand, 12785681 - 12785512
Alignment:
Q  88 gcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagtc 187  Q
    |||||||||||||||||  ||| |||||| || ||||| || ||||||||||| ||||||||||| ||||||||||||||| | || ||| | ||||||     
T  12785681 gcaattgaagcctctcagctttacattgttgtattctctaagaactatgcttcttcaacttggtgtttgcgagaattggaatacatccttcattgcagta 12785582  T
Q  188 aactatattgaaaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
    ||  |||| ||||||   |||| ||| |||| |||||||||||||||||||| || | ||||||||||||    
T  12785581 aaaaatatggaaaacacattcttcctattttttatgatgttgatccttctgaggtacaaaagcaaagtgg 12785512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 100 - 257
Target Start/End: Original strand, 31566474 - 31566631
Alignment:
Q  100 tctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagtcaactatattgaa 199  Q
    |||||||||||  |||  |||||||||| ||| ||||||||||| || |||||||||| |||||| || ||||||  |||||||| | |   || |  ||    
T  31566474 tctcatgtttttgttgccgtcttctcaagaaattatgcttcctcgacatggtgcttgcaagaattagagaagatttgtgaatgcattgaggaatctgaaa 31566573  T
Q  200 aacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
    ||| |||||| | ||||||||||||||||||||||||||| || ||||||||||||||    
T  31566574 aacatgttcttcttgttttctatgatgttgatccttctgaggttcgaaagcaaagtgg 31566631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 119 - 256
Target Start/End: Complemental strand, 33361209 - 33361072
Alignment:
Q  119 tcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagtcaactatattgaaaacgtgttctgcctgtttt 218  Q
    |||| |||| |||||||||||||||||| ||||| |||| |||||| ||||||||   |||||||| | |   ||   |||||| |||||| ||||||||    
T  33361209 tcttttcaagaaactatgcttcctcaacatggtgtttgcaagaattagaaaagatatgtgaatgcattaagggatcaggaaaacatgttcttcctgtttt 33361110  T
Q  219 ctatgatgttgatccttctgatgtgcgaaagcaaagtg 256  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  33361109 ctatgatgttgatccttctgaggtgcggaagcaaagtg 33361072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 330
Target Start/End: Complemental strand, 33288284 - 33288075
Alignment:
Q  121 ttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagtcaactatattgaaaacgtgttctgcctgttttct 220  Q
    ||||||| |||||||||||||||||| ||||||||||  ||||| ||||||||   ||||||   |||  |||   ||||||   |||| || |||||||    
T  33288284 ttctcaagaaactatgcttcctcaacatggtgcttgcaggaattagaaaagatatgtgaatgtgttcatgtatcaagaaaacacattcttccagttttct 33288185  T
Q  221 atgatgttgatccttctgatgtgcgaaagcaaagtggaaattataaaatagcctttgctgaacatgaggaaacattcaaacatgactctcaaatggtgca 320  Q
    ||||||||||||||||||| ||||||||||||||||| | ||||     ||||||| |   ||||||  |||||||| |||| |||||||| ||||||      
T  33288184 atgatgttgatccttctgaggtgcgaaagcaaagtgggatttatggtgaagcctttaccatacatgaacaaacattccaacaagactctcagatggtgtc 33288085  T
Q  321 aagatggagg 330  Q
    ||||||||||    
T  33288084 aagatggagg 33288075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 264
Target Start/End: Original strand, 33641985 - 33642131
Alignment:
Q  118 gtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagtcaactatattgaaaacgtgttctgcctgttt 217  Q
    |||||||||| |||||||||||||||||| |||||| | | |||||| || ||||||  |||||||| | |   ||    ||||| |||||| ||| |||    
T  33641985 gtcttctcaagaaactatgcttcctcaacatggtgccttcaagaattagagaagatttgtgaatgcattgagggattagaaaaacatgttcttcctattt 33642084  T
Q  218 tctatgatgttgatccttctgatgtgcgaaagcaaagtggaaattat 264  Q
    | |||||||||||||||||||| || |||||||||||||||| ||||    
T  33642085 tttatgatgttgatccttctgaggtacgaaagcaaagtggaatttat 33642131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 257
Target Start/End: Complemental strand, 33265612 - 33265455
Alignment:
Q  100 tctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagtcaactatattgaa 199  Q
    ||||| |||||  ||| |||||| |||| |||||||||||||||||| ||||| || | |||||| ||||||||   |||||||  | |   ||   |||    
T  33265612 tctcaagtttttgttgcggtcttttcaataaactatgcttcctcaacatggtgtttacaagaattagaaaagatatgtgaatgcgttaagggatcaggaa 33265513  T
Q  200 aacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
    ||| |||||| || |||||||||||||||||||| ||||||||| |||||||||||||    
T  33265512 aacatgttcttccagttttctatgatgttgatccctctgatgtgagaaagcaaagtgg 33265455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 257
Target Start/End: Complemental strand, 33274756 - 33274599
Alignment:
Q  100 tctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagtcaactatattgaa 199  Q
    ||||| |||||  ||| |||||| |||| |||||||||||||||||| ||||| || | |||||| ||||||||   |||||||  | |   ||   |||    
T  33274756 tctcaagtttttgttgcggtcttttcaataaactatgcttcctcaacatggtgtttacaagaattagaaaagatatgtgaatgcgttaagggatcaggaa 33274657  T
Q  200 aacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
    ||| |||||| || |||||||||||||||||||| ||||||||| |||||||||||||    
T  33274656 aacatgttcttccagttttctatgatgttgatccctctgatgtgagaaagcaaagtgg 33274599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 9169491 - 9169431
Alignment:
Q  197 gaaaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
    |||||| |||||| | ||||||||||||||||||||||||||| |||||||||||||||||    
T  9169491 gaaaacatgttcttcttgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgg 9169431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 329
Target Start/End: Complemental strand, 33390705 - 33390574
Alignment:
Q  198 aaaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtggaaattataaaatagcctttgctgaacatgaggaaacattc 297  Q
    ||||| |||||| |||||||| |||||||||||||||||||| || |||||||||||||||| |||| | | ||| ||||   |||||||  ||| ||||    
T  33390705 aaaacttgttcttcctgttttttatgatgttgatccttctgaggttcgaaagcaaagtggaatttatgataaagcttttgtcaaacatgaacaaagattc 33390606  T
Q  298 aaacatgactctcaaatggtgcaaagatggag 329  Q
     ||||  ||||||| ||||||  |||||||||    
T  33390605 caacaaaactctcagatggtgtcaagatggag 33390574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 12786303 - 12786252
Alignment:
Q  206 ttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||||||||    
T  12786303 ttctgcctattttttatgatgttgatccttctgaggtgcgaaagcaaagtgg 12786252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 33403243 - 33403184
Alignment:
Q  198 aaaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
    ||||| |||| | ||||||||||||||||||||||||||||| || ||||||||||||||    
T  33403243 aaaacatgttattcctgttttctatgatgttgatccttctgaggttcgaaagcaaagtgg 33403184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 257
Target Start/End: Complemental strand, 33307198 - 33307059
Alignment:
Q  118 gtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagtcaactatattgaaaacgtgttctgcctgttt 217  Q
    ||||||||||  ||||||||||||||||| |||||| ||| |||||| || |||||   | |||||  |||   ||   |||||| | |||| |||||||    
T  33307198 gtcttctcaaggaactatgcttcctcaacatggtgcctgcaagaattagagaagatatgtaaatgcgttcagagatccagaaaacatattcttcctgttt 33307099  T
Q  218 tctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
    | |||||||||||||||||||  || ||||||||||||||    
T  33307098 tttatgatgttgatccttctgtggttcgaaagcaaagtgg 33307059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 257
Target Start/End: Complemental strand, 33412664 - 33412491
Alignment:
Q  84 tcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgc 183  Q
    ||||||||| ||||  ||||| |||||| | |  ||||| ||||  ||||||||||||||||| |||||| ||| |||||| ||||||||   ||||||     
T  33412664 tcgtgcaatcgaaggatctcaggttttcgtcgcagtcttttcaaggaactatgcttcctcaacatggtgcctgcaagaattagaaaagatctgtgaatgt 33412565  T
Q  184 agtcaactatattgaaaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
      |||   |  |  |||||  ||||| |||||||| |||||| ||||||||||||| ||||| |||||||||||    
T  33412564 gttcagggacctgaaaaacacgttcttcctgttttttatgatattgatccttctgaggtgcggaagcaaagtgg 33412491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 257
Target Start/End: Original strand, 17438039 - 17438196
Alignment:
Q  100 tctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagtcaactatattgaa 199  Q
    ||||| |||||  ||| ||| ||||||| | |||||||||||||||| ||||| |||  |||||| ||||||||   |||||||  |||  |     |||    
T  17438039 tctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattagaaaagatatgtgaatgcgttcaggtgccaggaa 17438138  T
Q  200 aacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
    ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  17438139 aacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgg 17438196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 257
Target Start/End: Complemental strand, 876 - 719
Alignment:
Q  100 tctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagtcaa-ctatattga 198  Q
    ||||| |||||| |||  ||||| |||| |||||||||||| ||||| |||||| ||| |||||| || ||||||  |||||||| ||||   || | ||    
T  876 tctcaggttttcgttgctgtcttatcaagaaactatgcttcttcaacatggtgcctgcaagaattagagaagatttgtgaatgca-tcaagggatctgga 778  T
Q  199 aaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
    |||  |||||| ||| ||||||||| ||| ||||||||||| ||   ||||||||||||    
T  777 aaatatgttcttcctattttctatggtgtcgatccttctgaggtaaaaaagcaaagtgg 719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 257
Target Start/End: Complemental strand, 9637 - 9480
Alignment:
Q  100 tctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagtcaa-ctatattga 198  Q
    ||||| |||||| |||  ||||| |||| |||||||||||| ||||| |||||| ||| |||||| || ||||||  |||||||| ||||   || | ||    
T  9637 tctcaggttttcgttgctgtcttatcaagaaactatgcttcttcaacatggtgcctgcaagaattagagaagatttgtgaatgca-tcaagggatctgga 9539  T
Q  199 aaacgtgttctgcctgttttctatgatgttgatccttctgatgtgcgaaagcaaagtgg 257  Q
    |||  |||||| ||| ||||||||| ||| ||||||||||| ||   ||||||||||||    
T  9538 aaatatgttcttcctattttctatggtgtcgatccttctgaggtaaaaaagcaaagtgg 9480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 6473203 - 6473158
Alignment:
Q  121 ttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattgg 166  Q
    |||||||||||||||||||| || || |||||||||| ||||||||    
T  6473203 ttctcaaaaaactatgcttcttccacatggtgcttgcaagaattgg 6473158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 16466089 - 16466056
Alignment:
Q  209 tgcctgttttctatgatgttgatccttctgatgt 242  Q
    |||||||||||||||| |||||||||||||||||    
T  16466089 tgcctgttttctatgacgttgatccttctgatgt 16466056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 500161 - 500125
Alignment:
Q  212 ctgttttctatgatgttgatccttctgatgtgcgaaa 248  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  500161 ctgttttctatgatgttgctccgtctgatgtgcgaaa 500125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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