View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7836_low_18 (Length: 341)
Name: NF7836_low_18
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 7595777 - 7596071
Alignment:
| Q |
16 |
atgaaggaattgaaggaaatatatttgcttccatatttaccaaaacagagaagctaaagcagaggattttatttatttttatcaagtaagtaaagtatag |
115 |
Q |
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| T |
7595777 |
atgaaggaattgaaggaaatatatttgcttccatatttaccaaaacagagaagctaaagcaggggattttatttttttttatcaagtaagtaaagtatag |
7595876 |
T |
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| Q |
116 |
taataataacnnnnnnnacatgcacgtgcacccaccctacatatataatttccatggaccacacgatagttatggatataaatgtatatgtacgtaccgt |
215 |
Q |
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|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7595877 |
taataataactttttttacatgtac----------cctacatatataatttccatggaccacacgatagttatggatataaatgtatatgtacgtaccgt |
7595966 |
T |
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| Q |
216 |
agtgtcnnnnnnncgtggcgattgagtgaaggagtatgtaaagtgagagagatcagagggatgatgattttgtgaagaagaggctcttaagacatttgtg |
315 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7595967 |
agtgtcaaaaaaacgtggcgattgagtgaag--atatgtaaagtgagagagatcagagggatgatgattttgtgaagaagaggctcttaagacatttgtg |
7596064 |
T |
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