View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7836_low_2 (Length: 645)
Name: NF7836_low_2
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Original strand, 55695745 - 55696374
Alignment:
| Q |
1 |
atcaaacggcaagttaaagagccttaaaaaactgcaactgatgacaaaaataatgcaattttgatttaaaaagttggcttgaattttgtttttctcttct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55695745 |
atcaaacggcaagttaaagagccttaaaaaactgcaactaatgacaaaaataatgcaattttgatttaaaaagttggcttgaattttgtttttctcttct |
55695844 |
T |
|
| Q |
101 |
gaaaggaaaggacaaaagcaagaatgataatatctgagatgctaaaactgatatcttgaattgagtatagggagtagatttgctgcatgagcaagaatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55695845 |
gaaaggaaaggacaaaagcaagaatgataatatctgagatgctaaaattgatatcttgaattgagtatagggagtagatttgctgcatgagcaagaatgt |
55695944 |
T |
|
| Q |
201 |
atgaagtcaaaacctaatgagaaataccaacatcacaatctctaaaacactatttactgactgaaatttgaaattcataggg--atcccatagaaactag |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
55695945 |
gtgaagtcaaaacctaatgagaaataccaacatcacaatctctaaaacactatttactgactgaaatttgaaattcatagggatatcccatagaaactag |
55696044 |
T |
|
| Q |
299 |
ggaaatggattctctcaattgggnnnnnnnncttgaggaaataatgaggtgatcttaaccattgatctccatattatcaatggtcaagatcactgattaa |
398 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55696045 |
ggaaatggattctctcaattgggaaaaaaaacttgaggaaataatgaggagatcttaaccattgatctccatattatcaatggtcaagatcagtgattaa |
55696144 |
T |
|
| Q |
399 |
gatctctacattattgcctcaa--annnnnnnncaatagagagaatcttgatccaatgtttggttgctgctacaccacgtagtttcccaatttgcacaat |
496 |
Q |
| |
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||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55696145 |
gatctctacattatttcctcaagttttttttttcaatagagagaatcttgatcccgtgtttggttgctgctacaccacgtagtttcccaatttgaacaat |
55696244 |
T |
|
| Q |
497 |
gcatttaccttggaacgcaagaaaaccgatgctatcgccaaaccaaacgtatacataacacatttcagaaagtgttcgagaatgcgctgctagcacttca |
596 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55696245 |
gcatttaccttggaatgcaagaaaactgatgctatcgccaaaccaaacgtatacataacacatttcagaaagtgttcgagaatgcgctgctagcacttca |
55696344 |
T |
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| Q |
597 |
caaacttaattgttgtgccacactcccgat |
626 |
Q |
| |
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|||||||||| ||||||||||||||||||| |
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| T |
55696345 |
caaacttaatggttgtgccacactcccgat |
55696374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 35803900 - 35803815
Alignment:
| Q |
44 |
acaaaaataatgcaattttgatttaaaaagttggcttgaattttgtttttctcttctgaaaggaaaggacaaaagcaagaatgataa |
130 |
Q |
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| T |
35803900 |
acaaaaataatgcaattttgaattaaaaagttggcttgaattttgtttttctcttctgaaaggaagggacaaaaacaa-aatgataa |
35803815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 7898204 - 7898163
Alignment:
| Q |
348 |
tgatcttaaccattgatctccatattatcaatggtcaagatc |
389 |
Q |
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| T |
7898204 |
tgatcttgaccattgatctccacattatcaatggtcaagatc |
7898163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 26919532 - 26919500
Alignment:
| Q |
349 |
gatcttaaccattgatctccatattatcaatgg |
381 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
26919532 |
gatcttaaccattgatctccatattatcaatgg |
26919500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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