View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7836_low_22 (Length: 250)
Name: NF7836_low_22
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 33541478 - 33541713
Alignment:
| Q |
16 |
atacaatttcaagtttcatctagaaacttctgatctgagtnnnnnnn--gtacctagtaacttttgatacatatcccttcttttttcttcttcttatttt |
113 |
Q |
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| T |
33541478 |
atacaatttcaagtttcatctagaaacttctgatctgagtaaaaaaaaagtacctagtaacttttgatacatatcccttttttttt-ttcttcttatttt |
33541576 |
T |
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| Q |
114 |
atggattttcatatatctatgactctaaactgtgtttcttaagagtttcgctatattctcaaaattcaaaactcttactcaaaatcaagggctccattct |
213 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33541577 |
atggattttcatatatctatgactctaaactgtgtctcttaagagtttcgctatattctcaaaattcaaaactcttactcaaaatcaagggctccattct |
33541676 |
T |
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| Q |
214 |
ctctttttccatgtaaatcaaacacattataaaatcc |
250 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
33541677 |
ctctttttccatgtaaatcaaacacattataaaatcc |
33541713 |
T |
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