View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7836_low_5 (Length: 546)
Name: NF7836_low_5
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Complemental strand, 45540378 - 45539849
Alignment:
| Q |
1 |
gtcacggaggcttggttgatgtctggtatatgagaatgagcttccaaaggattgttagatgctctcccaagctcttgttctgttaacggaggtggtggtt |
100 |
Q |
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| T |
45540378 |
gtcacgggggcttggttgatgtctggtatatgagaatgagcttccaaaggattgttagatgctctcccaagctcttgttctgttaacggaggtggtggtt |
45540279 |
T |
|
| Q |
101 |
gataagcatttgtagcatgaccagttcgtaaatcaatattgactttgttgtcacctttaacttccatcggctaacaacgtcaagtgaacaaggtttgaag |
200 |
Q |
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| T |
45540278 |
gataagcatttgtggcatgaccagttcgtaaatcaatattgactttgttgtcacctttaacttccatcggctaacaacgtcaagtgaacaaggtttgaag |
45540179 |
T |
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| Q |
201 |
attccgatggaaattatggtaagctgtagaatcaaatgttacagcaagaacccgttaaaacaccataccacnnnnnnnnnnnntcatgtcaaagtttaag |
300 |
Q |
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| T |
45540178 |
attccgatggaaattatggtaagctgtaaaatcaaatgttacaacaagaacccgttaaaacaccataccacaaaaacaaaaaatcatgtcaaagtttaag |
45540079 |
T |
|
| Q |
301 |
gaaaaacacattttgtttcgaactaacaaactttcaaactcatttgaatttgaaatgcatgtattatactctgattcaagtaaagatgaaaaataaaaat |
400 |
Q |
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| T |
45540078 |
gaaaaacacattttgtttcgaactaacaaactttcaaactcatttgaatttgaaatgcatgtattatactctgattcaagtagagatgaaaaataaaaat |
45539979 |
T |
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| Q |
401 |
ttcaaatgacttgtaatttagagagcatacactaactttacataaccaaataagataaacaataaaaaggtaatcaaggaaaagaggtgcgaaactccat |
500 |
Q |
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| T |
45539978 |
ttcaaatgacttgtaatttagatagcatacactaactttacataaccatataagataaacaataaaaaggtaatcaaggaaaagaggtgcgaaactccat |
45539879 |
T |
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| Q |
501 |
cacgacaagaaaaatactaaacttgcatac |
530 |
Q |
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| T |
45539878 |
cacgacaagaaaaatactaaacttgcatac |
45539849 |
T |
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