View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7836_low_9 (Length: 458)
Name: NF7836_low_9
Description: NF7836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7836_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 74 - 440
Target Start/End: Original strand, 6803376 - 6803753
Alignment:
| Q |
74 |
tttgtgagaaaattggtgaatgattttatatgtaagtagtaattgggagaagtttggaattaaatttctcgtgagttctaaactataaataaa------- |
166 |
Q |
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| T |
6803376 |
tttgtgagaaaattggtgaatgattttatatgtaagtagtaattgggagaagtttggaattaaatttctcatgagttctaaactataaataaaaaaaata |
6803475 |
T |
|
| Q |
167 |
taaatatggtatgtgttgatgagaagtatagttgaaatacatacataatgtggcaaacaagaagacaatcaaaggaacaagtctaacataagtcannnnn |
266 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| |
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| T |
6803476 |
taaacatggtatgtgttgatgagaagtttagttgaaatacatacataatgtggcaaacaagaagacaaccaaaggagcaagcctaacataagtcattttt |
6803575 |
T |
|
| Q |
267 |
nnagagcttagttttgtgttgcattatttcattcttgcatgcaacaatatatagttacatgttgaaactaggaacataatgcttcctaattacttaatac |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6803576 |
ttagagcttagttttgtgttgcattatttcattcttgcatgcaacaatatatagttacatgttgaaactagtaacataatgcttcctaattacttaatac |
6803675 |
T |
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| Q |
367 |
t----atgtttcaccaaccaccatattatatacatgtttcaccaaacaaatatgtgtttagcaatttgttgtcatatt |
440 |
Q |
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| T |
6803676 |
tatacatgtttcaccaaccaccatattatatacatgtttcaccaaacaaatgtgtgtttagcaatttgttgtcatatt |
6803753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 6803271 - 6803340
Alignment:
| Q |
13 |
agcagagacaaatagggttggaacaatgcacataccattaaacaataaaattagtgataagtttgtgaga |
82 |
Q |
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| T |
6803271 |
agcaaagacaattagggtagaaacaatgcacataccattaaacaataaaattagtgataagtttgtgaga |
6803340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 6786179 - 6786255
Alignment:
| Q |
182 |
ttgatgagaagtatagttgaaatacatacataatgtggcaaacaagaagacaatcaaaggaacaagtctaacataag |
258 |
Q |
| |
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|||||||||| |||| | ||||||||||| ||| |||||| ||||||||||| |||||||| || |||||||||| |
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| T |
6786179 |
ttgatgagaaatatatctaaaatacatacagaatatggcaagcaagaagacaaccaaaggaatgagcctaacataag |
6786255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 7949929 - 7949893
Alignment:
| Q |
274 |
ttagttttgtgttgcattatttcattcttgcatgcaa |
310 |
Q |
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| T |
7949929 |
ttagttttgtgttgcattagttcattcttgcatgcaa |
7949893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 7941136 - 7941072
Alignment:
| Q |
175 |
gtatgtgttgatgagaagtatagttgaaatacatacataatgtggcaaacaagaagacaatcaaa |
239 |
Q |
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|||||| ||| |||||| || ||| ||||||||||| |||||||||| ||||||||||| |||| |
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| T |
7941136 |
gtatgtattggtgagaaataaggttaaaatacatacaaaatgtggcaagcaagaagacaaccaaa |
7941072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 30137366 - 30137430
Alignment:
| Q |
197 |
gttgaaatacatacataatgtggcaaacaagaagacaatcaaaggaacaagtctaacataagtca |
261 |
Q |
| |
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||||||||||||||| |||| ||||| |||||||||| ||||||| | || |||||||||||| |
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| T |
30137366 |
gttgaaatacatacagaatgcggcaagcaagaagacagccaaaggagctagcttaacataagtca |
30137430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 30143495 - 30143559
Alignment:
| Q |
197 |
gttgaaatacatacataatgtggcaaacaagaagacaatcaaaggaacaagtctaacataagtca |
261 |
Q |
| |
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||||||||||||||| |||| ||||| |||||||||| ||||||| | || |||||||||||| |
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| T |
30143495 |
gttgaaatacatacagaatgcggcaagcaagaagacagccaaaggagctagcttaacataagtca |
30143559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 30146917 - 30146981
Alignment:
| Q |
197 |
gttgaaatacatacataatgtggcaaacaagaagacaatcaaaggaacaagtctaacataagtca |
261 |
Q |
| |
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||||||||||||||| |||| ||||| |||||||||| ||||||| | || |||||||||||| |
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| T |
30146917 |
gttgaaatacatacagaatgcggcaagcaagaagacagccaaaggagctagcttaacataagtca |
30146981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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