View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7837_high_5 (Length: 378)
Name: NF7837_high_5
Description: NF7837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7837_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 8460492 - 8460853
Alignment:
| Q |
1 |
tctatgaccacttttatgattggaataactcatttcatgagcagattgtgaagttggtacgtaaattactggtgtcatttgttcatnnnnnnncatacta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
8460492 |
tctatgaccacttttatgattggaataactcatttcatgagcagattgtgaagttggtacgtaaaatactggtgtcatttgttcataaaaaaacatacta |
8460591 |
T |
|
| Q |
101 |
gtattatgccgcattttcttttgacaaaaagaacctagtataccaatctgcatttaactgcagattgacactcgcaagcgtcaaggtattcatagcagat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8460592 |
gtattatgccgcattttcttttgacaaaaagaacctagtataccaatctgcatttaactgcagattgacactcgcaagcgtcaagatattcatagcagat |
8460691 |
T |
|
| Q |
201 |
cacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagcccatctgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8460692 |
cacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagcccatctgg |
8460791 |
T |
|
| Q |
301 |
gagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
362 |
Q |
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| T |
8460792 |
gagggaatggacactctcaacatgtggctataactatgctgtatggcacaagtagtgttcat |
8460853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 267 - 362
Target Start/End: Original strand, 12950893 - 12950986
Alignment:
| Q |
267 |
tgaagattggagatggttcatggagcccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
362 |
Q |
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| T |
12950893 |
tgaagattggagatggttcatggagcccatctgggagggaatggaca--ctcaaccagtggccataactaggttgtatggcacaagtagtgttcat |
12950986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 193 - 362
Target Start/End: Original strand, 12127294 - 12127461
Alignment:
| Q |
193 |
tagcagatcacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
292 |
Q |
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|||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12127294 |
tagcagatcaactattaggattctggaggctaagcagaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
12127393 |
T |
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| Q |
293 |
ccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
362 |
Q |
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| T |
12127394 |
ccatctaggagggaatggaca--ctcaaccagtggccataactaggttgtatggcacaagtagtgttcat |
12127461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 32220353 - 32220285
Alignment:
| Q |
292 |
cccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
362 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||| ||||||| | |||||||||||| |||||||||| |
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| T |
32220353 |
cccatctgggagggaatggaca--ctcaaccagtggccataactaggttgtatggcacaagtagtgttcat |
32220285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 193 - 362
Target Start/End: Original strand, 23101499 - 23101666
Alignment:
| Q |
193 |
tagcagatcacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
292 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23101499 |
tagcagatcaactattaggattctggaggccaagcagaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
23101598 |
T |
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| Q |
293 |
ccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
362 |
Q |
| |
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| T |
23101599 |
ccatctaggagggaatggaca--ctcaacccgtggccataactagattgtatggcacaagtagtgttcat |
23101666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 212 - 362
Target Start/End: Complemental strand, 39618903 - 39618756
Alignment:
| Q |
212 |
attctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagcccatctgggagggaatgga |
311 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
39618903 |
attctggaggccaagcagaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcat-gagcccatctaggagggaatgga |
39618805 |
T |
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| Q |
312 |
cactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
362 |
Q |
| |
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|| |||||| |||| ||||||| | |||||||||||| |||||||||| |
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| T |
39618804 |
ca--ctcaaccagtggtcataactaggttgtatggcacaagtagtgttcat |
39618756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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