View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7837_low_1 (Length: 669)
Name: NF7837_low_1
Description: NF7837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7837_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 15 - 653
Target Start/End: Complemental strand, 32313869 - 32313223
Alignment:
| Q |
15 |
tcttcgtctttttggttctgagaatgttcaacagatggtggtgcagaactgctatctggttgcaaaatctgagcaagtgtattgcaaaccaaaactaata |
114 |
Q |
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| T |
32313869 |
tcttcgtctttttggttctgagaatgttcaacagatggtggtgcagaactgctata-ggttgcaaaatctgagcaagtgtattgcaaaccaaaactaata |
32313771 |
T |
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| Q |
115 |
tttgcttttggtttttaaactagcacacccttaattacaagggcagggccatctctgaactctatttattattgtagtttactacaacaaaagaaaaacc |
214 |
Q |
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| T |
32313770 |
tttggttttggtttttaaacttgcacacccttaattacaagggtagggccatctctgaactctatttattattgtagtttactacaacaaaagaaaaacc |
32313671 |
T |
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| Q |
215 |
caatctattcagggtaaatgttgatgttaaaatgtcttatctaaatgatcaactaaaccaaattgatgcttgtctctaccacaatgacacaagaaagatg |
314 |
Q |
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| T |
32313670 |
gaatctatttagggtaaatgttgatgttaaaatgtgttacttaaatgatcaactaaaccaaattgatgtttgtctctaccacaatgacacaagaaagatg |
32313571 |
T |
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| Q |
315 |
ataagttttgactatcgttgttcgtcgattgactcagaatgaaactagatgcgttcggttcacta-gaatgaaactctaggatggttagtgttgatcaac |
413 |
Q |
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| T |
32313570 |
ataagttttgactatcgttgttcgtcgattgactcataatgaaactagatgcgttcggttcactaggaatgaaactctaggatggttagtgctgatcaac |
32313471 |
T |
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| Q |
414 |
tagatgcgttcgatttaccagaatgaaactctagaacgacgaccacgatgtagagtcatgttttctatatttattatttagttaatattgttcgaaggga |
513 |
Q |
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| T |
32313470 |
tagatgcgttcgatttaccagaatgaaactctaaaacgatgacgacgatgtagagtcatgttttctatatttattatttagtcaatattgtctgaaggga |
32313371 |
T |
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| Q |
514 |
tcaatctaccttcgtgtgatatgtatatactattcgagcaagtttgatttgccccaaaacataagtataaattagggtat---------atagatgaact |
604 |
Q |
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| T |
32313370 |
tcaatctaccttcgtgtgatatgtatatactattcgagcaagtttgatttgcccc-aagcataagtataaattagggtatgcactatgcatagatgaact |
32313272 |
T |
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| Q |
605 |
aaatgaagaaatttgtttgattgatccatgatcttgtttgagtttaatt |
653 |
Q |
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| T |
32313271 |
aaatgaagaaatttatttgactgatccatgatcttgtttgtgtttaatt |
32313223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 594 - 653
Target Start/End: Complemental strand, 32311587 - 32311528
Alignment:
| Q |
594 |
atagatgaactaaatgaagaaatttgtttgattgatccatgatcttgtttgagtttaatt |
653 |
Q |
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| T |
32311587 |
atagatgaactaaatgaagaaatttgtttgactgatccatgatcttgtttgtgtttaatt |
32311528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 609 - 651
Target Start/End: Complemental strand, 24735136 - 24735094
Alignment:
| Q |
609 |
gaagaaatttgtttgattgatccatgatcttgtttgagtttaa |
651 |
Q |
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| T |
24735136 |
gaagaattttgtttggttgatccatgatcttgtttgtgtttaa |
24735094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 609 - 653
Target Start/End: Original strand, 19435209 - 19435253
Alignment:
| Q |
609 |
gaagaaatttgtttgattgatccatgatcttgtttgagtttaatt |
653 |
Q |
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| T |
19435209 |
gaagaaatttgtttggctcatccatgatcttgtttgtgtttaatt |
19435253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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