View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7837_low_12 (Length: 203)
Name: NF7837_low_12
Description: NF7837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7837_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4821947 - 4821752
Alignment:
| Q |
1 |
aaagcttctttttcttcttatcacgagttcataatcagattgcttattttccaaaagtctagccatggagatataataataaataacaagtttaattttg |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4821947 |
aaagcttcattttcttcttatcacgagttcataatcagattgcttattttccaaaagtctagccacggagatataataataaataacaagtttaattttg |
4821848 |
T |
|
| Q |
101 |
atacaccgtcaaagcaaacttttatacggctaaacaatcacaagtcacaaaacatcgttaattacgcaagaacttcatatacgtttcttcttttca |
196 |
Q |
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| T |
4821847 |
atacaccatcaaagcaaacttttattcggctaaacaatcacaagtcacaaaacatcgttaattacgcaagaacttcatatacgtttcttcttttca |
4821752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 4811893 - 4811820
Alignment:
| Q |
50 |
tccaaaagtctagccatggagatataataataaataacaagtttaattttgatacaccgtcaaagcaaactttt |
123 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4811893 |
tccaaaagtcaagccatggaaatataataataaataacaagtttaattttgatacaccgtcaaagtaaactttt |
4811820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 4865356 - 4865303
Alignment:
| Q |
50 |
tccaaaagtctagccatggagatataataataaataacaagtttaattttgata |
103 |
Q |
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|||| |||||| |||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
4865356 |
tccacaagtctggccatggaaatataataataaataacgagtttaattttgata |
4865303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4811965 - 4811922
Alignment:
| Q |
1 |
aaagcttctttttcttcttatcacgagttcataatcagattgctt |
45 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4811965 |
aaagcttctttttcttcttatcacgagttca-aatcagattgctt |
4811922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4865428 - 4865385
Alignment:
| Q |
1 |
aaagcttctttttcttcttatcacgagttcataatcagattgctt |
45 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4865428 |
aaagcttcttttt-ttcttatcacgagttcataatcagattgctt |
4865385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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