View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7837_low_2 (Length: 660)
Name: NF7837_low_2
Description: NF7837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7837_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 27025387 - 27025880
Alignment:
| Q |
1 |
aatatgaacacataaaccgacccccaccagggttttgatccctatacggattataacaattccgacacctcctcgtagctgtcttccttagtttttgcat |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27025387 |
aatacgaacacataaaccgacccccaccagggttttgatccctatacggattataacaattccgacacctcctcgtagctgtcttccttagtttttgcat |
27025486 |
T |
|
| Q |
101 |
ctctaatgcctcaaacctcttcctctccctaagcctagcattcctccttacccgccaagccgacagctgaggcatcaaaatctcataccaaaagagagta |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27025487 |
ctctaatgcctcaaacctcttcctctccctaagcctagcattcctccttacccgccaagccgacagctgaggcatcaaaatctcataccaaaagagagta |
27025586 |
T |
|
| Q |
201 |
accaacaacacaaaaacacaagccagtctcggcgaagtaatctcaaaccgaaaagccggcggcagaagctgagaaagtgcccataaaccaatcaatggta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27025587 |
accaacaacacaaaaacacaagccagtctcggcgaagtaatctcaaaccgaaaagccggcggcagaagctgagaaagtgcccataaaccaatcaatggta |
27025686 |
T |
|
| Q |
301 |
taaccaaccatggtagcacagtagcaacccggcgagataacttctgaatcacacacagtatacacattatcctctaaccctaaccttcttcctttttctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27025687 |
taaccaaccatggtagcacagtagcaacccggcgagataacttctgaatcacacacagtatacacattatcctctaaccctaaccttcttcctttttctt |
27025786 |
T |
|
| Q |
401 |
aactatatccaataaaaatcaatgctttcaagaaaaccctaataaccctctttacctttcttcctcaaaaacaataccaacagaattttaccac |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27025787 |
aactatatccaataaaaatcaatgctttcaagaaaaccctaataaccctctttacctttcttcctcaaaaacaataccaacagaattttaccac |
27025880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 26968863 - 26969247
Alignment:
| Q |
1 |
aatatgaacacataaaccgacccccaccagggttttgatccctatacggattataacaattccgacacctcctcgtagctgtcttccttagtttttgcat |
100 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| || ||||| ||||||||||| | || || ||||||||||||||||| |||||||| ||||| ||||| |
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|
| T |
26968863 |
aatacgaacacataaaccgactcccaccaggattctgatctctatacggattcaagcagttacgacacctcctcgtagccgtcttcctcagtttctgcat |
26968962 |
T |
|
| Q |
101 |
ctctaatgcctcaaacctcttcctctccctaagcctagcattcctccttacccgccaagccgacagctgaggcatcaaaatctcataccaaaagagagta |
200 |
Q |
| |
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|| | || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26968963 |
ttcaatagcttcaaacctcttcctctccctaagcctagcattcctcctcacccgccaagccgacagctgaggcatcaaaatctcataccaaaacagagta |
26969062 |
T |
|
| Q |
201 |
accaacaacacaaaaacacaagccagtctcggcgaagtaatctcaaaccgaaaagccggcggcagaagctgagaaagtgcccataaaccaatcaatggta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| || | |
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| T |
26969063 |
accaacaacacaaaaacacaagccagtctcggtgaagtaatctcaaacctaaaagccggtggcagaagttgagaaagtgcccataaaccaatcaaaggaa |
26969162 |
T |
|
| Q |
301 |
taaccaaccatggtagcacagtagcaacccggcgagataacttctgaatcacacacagtatacacattatcctctaaccctaacc |
385 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |||| |
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|
| T |
26969163 |
taaccaaccaaggcagcattgtagcaacccggcgagaacacttctgaatgacacacagtatacacattatcctcttacccaaacc |
26969247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 592 - 644
Target Start/End: Original strand, 27025978 - 27026030
Alignment:
| Q |
592 |
tagcctattgtacaagctaatgcacgttaaaaaatcgattttaacgaactttg |
644 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
27025978 |
tagcctattgtacaagctaatgcacgttaaaaaaacgattttaacgaactttg |
27026030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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