View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7837_low_3 (Length: 490)

Name: NF7837_low_3
Description: NF7837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7837_low_3
NF7837_low_3
[»] chr8 (3 HSPs)
chr8 (11-332)||(18010865-18011187)
chr8 (47-331)||(18015088-18015363)
chr8 (11-59)||(43441597-43441645)
[»] chr4 (4 HSPs)
chr4 (11-331)||(15537144-15537464)
chr4 (47-332)||(25322962-25323248)
chr4 (11-59)||(16937758-16937806)
chr4 (228-333)||(16937480-16937589)
[»] chr1 (1 HSPs)
chr1 (171-331)||(42039863-42040023)
[»] chr3 (2 HSPs)
chr3 (332-474)||(3721155-3721294)
chr3 (11-59)||(2765590-2765638)
[»] chr7 (3 HSPs)
chr7 (11-59)||(35973228-35973276)
chr7 (11-59)||(35994640-35994688)
chr7 (11-54)||(43582817-43582860)
[»] chr6 (1 HSPs)
chr6 (22-59)||(26253964-26254001)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 18011187 - 18010865
Alignment:
Q  11 cacagggcccgtaagatgatagctctgataccaatttgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaa 110  Q
    |||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18011187 cacaggccccgtaagatgatagctctggtgccaatttgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaa 18011088  T
Q  111 tgggaaattaatt-attaatttcactaaaacaatacacttaatagtgtttcacaaaacaaaacagaacacagctacatcaccactaaattaggaacgtgg 209  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  18011087 tgggaaattgatttattaatttcactaaaacaatacacttaatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggatcgtgg 18010988  T
Q  210 gataacaacaactgctttctcctaaagtgtaggtaccacttattgactaaaataaaaaactgaaacaatagagaataaagataaatcagccacgtaatgc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18010987 gataacaacaactgctttctcctaaagtgtaggtaccacttattgactaaaataaaaaactgaaacaatagggaataaagataaatcagccacgtaatgc 18010888  T
Q  310 agtccaaaagcaataattaacag 332  Q
    |||||||||||||||||||||||    
T  18010887 agtccaaaagcaataattaacag 18010865  T

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Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 47 - 331
Target Start/End: Complemental strand, 18015363 - 18015088
Alignment:
Q  47 tgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattaatt-attaatttcactaaaacaatac 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  18015363 tgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattgatttattaatttcactaaaacaatac 18015264  T
Q  146 acttaatagtgtttcacaaaacaaaacagaacacagctacatcaccactaaattaggaacgtgggataacaacaactgctttctcctaaagtgtaggtac 245  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||          ||    
T  18015263 acttaatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttctccta----------ac 18015174  T
Q  246 cacttattgactaaaataaaaaactgaaacaatagagaataaagataaatcagccacgtaatgcagtccaaaagcaataattaaca 331  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18015173 cacttattgactaaaataaaaaactgaaacaatagggaataaagataaatcagccacgtaatgcagtccaaaagcaataattaaca 18015088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 43441645 - 43441597
Alignment:
Q  11 cacagggcccgtaagatgatagctctgataccaatttgttggttatatg 59  Q
    |||||| |||||||||||||||||||| ||| |||||||||||| ||||    
T  43441645 cacaggtcccgtaagatgatagctctgctactaatttgttggttttatg 43441597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 15537464 - 15537144
Alignment:
Q  11 cacagggcccgtaagatgatagctctgataccaatttgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaa 110  Q
    |||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15537464 cacaggtcccgtaagatgatagctctggtgccaatttgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacattgaaatggaa 15537365  T
Q  111 tgggaaattaat-tattaatttcactaaaacaatacacttaatagtgtttcacaaaacaaaacagaacacagctacatcaccactaaattaggaacgtgg 209  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  15537364 tgggaaattgatatattaatttcactaaaacaatacacttaatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggaacgtgg 15537265  T
Q  210 gataacaacaactgctttctcctaaagtgtaggtaccacttattgactaaaataaaaaactgaaacaatagagaataaagataaatcagccacgtaatgc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  15537264 gataacaacaactgctttctcctaaagtgtaggtaccacttattgactaaaataaaaaactgaaa-aatagaaaataaagataaatcagccacgcaatgc 15537166  T
Q  310 agtccaaaagcaataattaaca 331  Q
    ||||||||||||||||||||||    
T  15537165 agtccaaaagcaataattaaca 15537144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 47 - 332
Target Start/End: Original strand, 25322962 - 25323248
Alignment:
Q  47 tgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattaatt-attaatttcactaaaacaatac 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  25322962 tgttggttatatggtataaatgaaaaataatatgatagacagggaagaatacgttgaaatggaatgggaaattgatttattaatttcactaaaacaatac 25323061  T
Q  146 acttaatagtgtttcacaaaacaaaacagaacacagctacatcaccactaaattaggaacgtgggataacaacaactgctttctcctaaagtgtaggtac 245  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25323062 acttaatagtgtttcacaaaacaaaacagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttctcctaaagtgtaggtac 25323161  T
Q  246 cacttattgactaaaataaaaaactgaaacaatagagaataaagataaatcagccacgtaatgcagtccaaaagcaataattaacag 332  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25323162 cacttattgactaaaataaaaaactgaaacaatagggaataaagataaatcagccacgtaatgcagtccaaaagcaataattaacag 25323248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 16937806 - 16937758
Alignment:
Q  11 cacagggcccgtaagatgatagctctgataccaatttgttggttatatg 59  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  16937806 cacaggtcccgtaagatgatagctctgataccaatttgttggttttatg 16937758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 16937589 - 16937480
Alignment:
Q  228 ctcctaaagtgtaggtaccacttattgactaaaataaaaaactgaaacaatagagaataaagataaat--cagccacgtaatgcagtcc-aaaagc-aat 323  Q
    |||||||| |||||| |||||| ||||||||||| |  |||||||||||| | | ||||| |||||||   |||||||||||||||||| |||||| |||    
T  16937589 ctcctaaaatgtaggaaccactaattgactaaaacactaaactgaaacaaaataaaataaggataaataaaagccacgtaatgcagtccaaaaagcaaat 16937490  T
Q  324 aattaacaga 333  Q
    ||||||||||    
T  16937489 aattaacaga 16937480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 171 - 331
Target Start/End: Original strand, 42039863 - 42040023
Alignment:
Q  171 acagaacacagctacatcaccactaaattaggaacgtgggataacaacaactgctttctcctaaagtgtaggtaccacttattgactaaaataaaaaact 270  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42039863 acagaacacaactacatcaccactaaactaggaacgtgggataacaacaactgctttctcctaaagtgtaggtactacttattgactaaaataaaaaact 42039962  T
Q  271 gaaacaatagagaataaagataaatcagccacgtaatgcagtccaaaagcaataattaaca 331  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42039963 gaaataatagagaataaagataaatcagccacgtaatgcagtccaaaagcaataattaaca 42040023  T

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Target: chr3 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 332 - 474
Target Start/End: Complemental strand, 3721294 - 3721155
Alignment:
Q  332 gattttaagtgttaaacttattgtagcatttctactgccttagttgtttgtagtttgttctgttgttgtggtctggtcttttagtttgttggagtatgtt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  3721294 gattttaagtgttaaacttattgtagcatttctactgccttagttgtttgtagtttgttctgttgt---ggtctggtcttttagtttgttggagtatgtt 3721198  T
Q  432 acaacttacaagagaattttcagttgtgtaatagccataaaat 474  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  3721197 acaacttaaaagagaattttcagttgtgtaatagccataaaat 3721155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 2765638 - 2765590
Alignment:
Q  11 cacagggcccgtaagatgatagctctgataccaatttgttggttatatg 59  Q
    |||||| |||||||||||||| ||| | |||||||||||||||| ||||    
T  2765638 cacaggtcccgtaagatgataactccgctaccaatttgttggttttatg 2765590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 35973228 - 35973276
Alignment:
Q  11 cacagggcccgtaagatgatagctctgataccaatttgttggttatatg 59  Q
    |||||| || ||||||||||||||||| |||||||||||||||| ||||    
T  35973228 cacaggtcctgtaagatgatagctctgctaccaatttgttggttttatg 35973276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 35994640 - 35994688
Alignment:
Q  11 cacagggcccgtaagatgatagctctgataccaatttgttggttatatg 59  Q
    |||||| || ||||||||||||||||| |||||||||||||||| ||||    
T  35994640 cacaggtcctgtaagatgatagctctgctaccaatttgttggttttatg 35994688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 43582860 - 43582817
Alignment:
Q  11 cacagggcccgtaagatgatagctctgataccaatttgttggtt 54  Q
    |||||| || || |||||||||||||||||||||||||||||||    
T  43582860 cacaggtcctgtgagatgatagctctgataccaatttgttggtt 43582817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 26254001 - 26253964
Alignment:
Q  22 taagatgatagctctgataccaatttgttggttatatg 59  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  26254001 taagatgatagctctgctaccaatttgttggttttatg 26253964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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