View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7837_low_4 (Length: 448)
Name: NF7837_low_4
Description: NF7837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7837_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 25 - 423
Target Start/End: Complemental strand, 42359088 - 42358684
Alignment:
| Q |
25 |
taagataatagtagttatttgtcaccttttgttgcggcatatatgagccaaataggagatgacgtcgccagtaaaccaaccgtgtattgcggacgacacg |
124 |
Q |
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| T |
42359088 |
taagataatagtagttatttgtcaccttttgttgcggcatatatgagccaaataggagatgacgtcgccagtaaaccaaccgtgtattgcggacgacacg |
42358989 |
T |
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| Q |
125 |
ttcactatccttccttctatccctgtctcctttgccgtttcaaccatcttcttcatcaacatttttgtcaacacaaaatgacctgcaccacaatat--at |
222 |
Q |
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| T |
42358988 |
ttcactatccttccttcaatccctgtctcctttgccgtttcaaccatcttcttcatcaacatttttgtcaacacaaaatgacctgcaccacaatattaat |
42358889 |
T |
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| Q |
223 |
taatta-attaaattatatgcatatcaaat------nnnnnnntttgttgtaatcttactcacctaaataattagtggcaaaggtcatttcaactccatc |
315 |
Q |
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| T |
42358888 |
taattatattatattatatgcatatcaaattaaaaaaataaaaattgttgtaatcttactcacctaaataattagtggcaaaggtcatttcaactccatc |
42358789 |
T |
|
| Q |
316 |
ctcagagattgcgtgctcttctgcaaacttcccagcattgtttctagtaaacagcaacaacaacactagtcaacaatcaagtgccataactattgcatta |
415 |
Q |
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| T |
42358788 |
ctcagagattgcgtgctcttctgcaaacttcccagcattgtttctagtaaacag---caacaacactagtcaacaatcaagtgccataactattgcatga |
42358692 |
T |
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| Q |
416 |
aatgagag |
423 |
Q |
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| T |
42358691 |
aatgagag |
42358684 |
T |
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