View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7837_low_9 (Length: 260)
Name: NF7837_low_9
Description: NF7837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7837_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 12798886 - 12798660
Alignment:
| Q |
18 |
aaaattttaaggtttgcttaaattccacttttattctatttcaattactacatacaaaagtttgagtattgatttcttgttaccttcctagtactccatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12798886 |
aaaattttaaggtttgcttaaattccacttttattctatttcaattactacatacaaaagtttgagtattgatttcttgttaccttcctagtactccatc |
12798787 |
T |
|
| Q |
118 |
ggtttctctctctttgattttctatgtattttctgagtttttgcattgtatttgattctaaacggtgttgaatttgttgttggttttatatgtggccaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12798786 |
ggtttctctctctttgattttctatgtattttctgagtttttgcattgtatttgattctaaacagtgttgaatttgttgttggttttagatgtggccaaa |
12798687 |
T |
|
| Q |
218 |
tcttattcaaaaattggaggactttat |
244 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
12798686 |
ccttattcaaaaattggaggactttat |
12798660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 12736059 - 12735833
Alignment:
| Q |
18 |
aaaattttaaggtttgcttaaattccacttttattctatttcaattactacatacaaaagtttgagtattgatttcttgttaccttcctagtactccatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12736059 |
aaaattttaaggtttgcttaaattccacttttattctatttcaattactacatacaaaagtttgagtattgatttcttgttaccttcctagtgctccatc |
12735960 |
T |
|
| Q |
118 |
ggtttctctctctttgattttctatgtattttctgagtttttgcattgtatttgattctaaacggtgttgaatttgttgttggttttatatgtggccaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12735959 |
ggtttctctctctttgattttctatgtattttctgagtttttgcattgtatttgattctaaacagtgttgaatttgttgttggttttagatgtggccaaa |
12735860 |
T |
|
| Q |
218 |
tcttattcaaaaattggaggactttat |
244 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
12735859 |
ccttattcaaaaattggaggactttat |
12735833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 14124820 - 14124594
Alignment:
| Q |
18 |
aaaattttaaggtttgcttaaattccacttttattctatttcaattactacatacaaaagtttgagtattgatttcttgttaccttcctagtactccatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14124820 |
aaaattttaaggtttgcttaaattccacttttattctatttcaattactacatacaaaagtttgagtattgatttcttgttaccttcctagtactccatc |
14124721 |
T |
|
| Q |
118 |
ggtttctctctctttgattttctatgtattttctgagtttttgcattgtatttgattctaaacggtgttgaatttgttgttggttttatatgtggccaaa |
217 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14124720 |
agtttctctctctttgattttttatatattttctgagtttttgcattgtatttgattctaaacggtgttgaatttgttgttggttttagatgtggccaaa |
14124621 |
T |
|
| Q |
218 |
tcttattcaaaaattggaggactttat |
244 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
14124620 |
ccttattcaaaaattggaggactttat |
14124594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 20005545 - 20005771
Alignment:
| Q |
18 |
aaaattttaaggtttgcttaaattccacttttattctatttcaattactacatacaaaagtttgagtattgatttcttgttaccttcctagtactccatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20005545 |
aaaattttaaggtttgcttaaattccacttttattctatttcaattactacatacaaaagtttgagtattgatttcttgttaccttcctagtactccatc |
20005644 |
T |
|
| Q |
118 |
ggtttctctctctttgattttctatgtattttctgagtttttgcattgtatttgattctaaacggtgttgaatttgttgttggttttatatgtggccaaa |
217 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20005645 |
agtttctctctctttgattttttatatattttttgagtttttgcattgtatttgattctaaacggtgttgaatttgttgttggttttagatgtggccaaa |
20005744 |
T |
|
| Q |
218 |
tcttattcaaaaattggaggactttat |
244 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
20005745 |
ccttattcaaaaattggaggactttat |
20005771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 35053197 - 35052974
Alignment:
| Q |
17 |
gaaaattttaaggtttgcttaaattccacttttattctatttcaattactacatacaaaagtttgagtattgatttcttgtt---------accttccta |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||| |||||| || |
|
|
| T |
35053197 |
gaaaattttaaggtttgcttcaattccacttttattctattgcaattactacatacaaaagtttgattatggatatcttgttctatttactaccttctta |
35053098 |
T |
|
| Q |
108 |
gtactccatcggtttctctctctttgattttctatgtattttctgagtttttgcattgtatttgattctaaacggtgttgaatttgttgttggttttata |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||| |||| |||||||||||||| ||||||| || | |
|
|
| T |
35053097 |
gtactccatcggtttctctct-tttgattttctatgtattttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgtcgttggttataga |
35052999 |
T |
|
| Q |
208 |
tgtggccaaatcttattcaaaaatt |
232 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
35052998 |
tgtggccaaaccttattcaaaaatt |
35052974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 53322243 - 53322474
Alignment:
| Q |
17 |
gaaaattttaaggtttgcttaaattccacttttattctatttcaattactacatacaaaagtttgagtattgatttcttgtt---------accttccta |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
53322243 |
gaaaattttaaggtttgcttaaaatccacgtttattctattgcaattactacatacaaaaatttgagtattgatttcttgttctattcactaccttccta |
53322342 |
T |
|
| Q |
108 |
gtactccatcggtttctctctcttt--------gattttctatgtattttctgagtttttgcattgtatttgattctaaacggtgttgaatttgttgttg |
199 |
Q |
| |
|
||||||||||||| ||||||||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53322343 |
gtactccatcggtctctctctctctctctctctgattttctatgtgttttctgagtttttgcattgtatttgattttaaacggtgttgaatttgttgttg |
53322442 |
T |
|
| Q |
200 |
gttttatatgtggccaaatcttattcaaaaat |
231 |
Q |
| |
|
||| || ||||||||||| || |||||||||| |
|
|
| T |
53322443 |
gttatagatgtggccaaacctcattcaaaaat |
53322474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 40077083 - 40077163
Alignment:
| Q |
151 |
tgagtttttgcattgtatttgattctaaacggtgttgaatttgttgttggttttatatgtggccaaatcttattcaaaaat |
231 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| |||||||||||||| || || ||||||||| | |||||||| |||| |
|
|
| T |
40077083 |
tgagtttttgcattgtatttgattttaaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaat |
40077163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University