View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7838_high_1 (Length: 341)

Name: NF7838_high_1
Description: NF7838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7838_high_1
NF7838_high_1
[»] chr5 (10 HSPs)
chr5 (18-189)||(4238849-4239020)
chr5 (27-189)||(38615115-38615280)
chr5 (18-186)||(4235010-4235181)
chr5 (44-189)||(4247377-4247525)
chr5 (52-189)||(39116349-39116490)
chr5 (190-253)||(8520863-8520926)
chr5 (55-124)||(38614139-38614208)
chr5 (216-263)||(3033599-3033648)
chr5 (140-189)||(4248322-4248371)
chr5 (141-189)||(4241000-4241048)
[»] chr1 (2 HSPs)
chr1 (18-189)||(4164817-4164991)
chr1 (61-189)||(4163957-4164088)
[»] chr7 (2 HSPs)
chr7 (194-253)||(1601726-1601785)
chr7 (287-332)||(23567923-23567968)
[»] chr8 (2 HSPs)
chr8 (190-263)||(35808901-35808976)
chr8 (285-332)||(35808834-35808880)
[»] chr6 (1 HSPs)
chr6 (190-243)||(13866541-13866594)
[»] chr4 (3 HSPs)
chr4 (190-243)||(26920816-26920869)
chr4 (194-263)||(7113243-7113314)
chr4 (285-313)||(7113196-7113224)
[»] chr3 (2 HSPs)
chr3 (190-263)||(39129631-39129706)
chr3 (285-332)||(39129725-39129772)
[»] chr2 (2 HSPs)
chr2 (285-332)||(38928167-38928214)
chr2 (190-234)||(38928265-38928309)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 4239020 - 4238849
Alignment:
Q  18 taaaacgcgcacacacaactgcgagatcctcactatgaaccatgacgaacgtgtccaactaaattttttggcattttatatttatggagtaattatataa 117  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||    
T  4239020 taaaacgcgcacacacaattgtgaggtcctcactatgaaccatgacgaacgtgtccaactaaattttttggcattttctgttgatggagtaattatataa 4238921  T
Q  118 tttaagacatcgtttgactaaagtctttgtctcgttataactgttatatttgaccaagtgtaattataataa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4238920 tttaagacatcgtttgactaaagtctttgtctcgttataactgttatatttgatcaagtgtaattataataa 4238849  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 189
Target Start/End: Complemental strand, 38615280 - 38615115
Alignment:
Q  27 cacacacaactgcgagatcctcactatgaaccatgacgaacgtgtccaactaaattttttggcattttatatttatggagtaattatataatttaagaca 126  Q
    |||||||||||| ||| |||| ||||||||||||||||||||||||||| |||| ||||| |||||||   || | |||||||||||||||||||||| |    
T  38615280 cacacacaactgtgaggtcctgactatgaaccatgacgaacgtgtccaattaaaatttttagcattttcagttgaaggagtaattatataatttaagata 38615181  T
Q  127 tcgtttgactaaag---tctttgtctcgttataactgttatatttgaccaagtgtaattataataa 189  Q
    ||||||||||||||   ||||| |||| |||||||  |||||||||||| | ||||||||||||||    
T  38615180 tcgtttgactaaagctctctttatctcattataacgattatatttgaccgaatgtaattataataa 38615115  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 4235181 - 4235010
Alignment:
Q  18 taaaacgcgcacacacaactgcgagatcctcactatgaaccatgacgaacgtgtccaactaaattttttggcattttatatttatggagtaattatataa 117  Q
    |||||| | ||||||||| || ||| |||| ||||| || |||||||||||||||||||||||   ||||||||||  |||  | |||||||||||||||    
T  4235181 taaaactcacacacacaattgtgaggtcctgactataaatcatgacgaacgtgtccaactaaaaaatttggcatttcctatcgaaggagtaattatataa 4235082  T
Q  118 tttaagacatcgtttgactaaag---tctttgtctcgttataactgttatatttgaccaagtgtaattataa 186  Q
    ||||||| |||||||||||||||   |||||||||| ||||||| ||||||||| |||||||||||||||||    
T  4235081 tttaagatatcgtttgactaaagctctctttgtctcattataacagttatatttaaccaagtgtaattataa 4235010  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 4247525 - 4247377
Alignment:
Q  44 tcctcactatgaaccatgacgaacgtgtccaactaaattttttggcattttatatttatggagtaattatataatttaagacatcgtttgactaaag-tc 142  Q
    |||| |||||||||||||||||||| |||||||||||  |||||||||||    || |  ||||||||||| ||||||||| ||||||||||||||| ||    
T  4247525 tcctaactatgaaccatgacgaacgcgtccaactaaaaattttggcatttccggttgaaagagtaattataaaatttaagatatcgtttgactaaagctc 4247426  T
Q  143 t--ttgtctcgttataactgttatatttgaccaagtgtaattataataa 189  Q
    |  |||| || ||||||| ||||||||||||||||||||||||||||||    
T  4247425 taattgtgtcattataacggttatatttgaccaagtgtaattataataa 4247377  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 39116349 - 39116490
Alignment:
Q  52 atgaaccatgacgaacgtgtccaactaaattttttggcattttatatttatggagtaattatataatttaagacatcgtttgactaaag---tctttgtc 148  Q
    ||||||||||||||||| ||||  ||||| | |||||||||| |  || | ||||||| |||||||||||||| |||||||||||||||   ||||||||    
T  39116349 atgaaccatgacgaacgagtccggctaaaatgtttggcatttcaagttgaaggagtaactatataatttaagatatcgtttgactaaagatctctttgtc 39116448  T
Q  149 tcgttataactgttata-tttgaccaagtgtaattataataa 189  Q
    || ||||||| |||||| |||||| |||||||||||||||||    
T  39116449 tcattataacggttatattttgactaagtgtaattataataa 39116490  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 8520863 - 8520926
Alignment:
Q  190 gagcaatgctaaatcccgcgaagggatttctacgggaaacacgaaatagcagtattccatatca 253  Q
    ||||||||||||||||| | |||||||||||| |  ||||||||||||||||||||||||||||    
T  8520863 gagcaatgctaaatcccacaaagggatttctaagaaaaacacgaaatagcagtattccatatca 8520926  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 38614208 - 38614139
Alignment:
Q  55 aaccatgacgaacgtgtccaactaaattttttggcattttatatttatggagtaattatataatttaaga 124  Q
    ||||||||||||||| | ||||||||||||||||||||| |  || | ||||||||||||||| ||||||    
T  38614208 aaccatgacgaacgttttcaactaaattttttggcatttcaagttgaaggagtaattatataacttaaga 38614139  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 3033599 - 3033648
Alignment:
Q  216 tttctacgggaaacacgaaatagcagtattccatatca--ctctttcttt 263  Q
    ||||||||||||||||||||||||| ||||||||||||  ||||||||||    
T  3033599 tttctacgggaaacacgaaatagcaatattccatatcaatctctttcttt 3033648  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 4248371 - 4248322
Alignment:
Q  140 gtctttgtctcgttataactgttatatttgaccaagtgtaattataataa 189  Q
    |||||| |||| | ||||| ||| ||||||||||||||||||||||||||    
T  4248371 gtctttatctcatcataacggttgtatttgaccaagtgtaattataataa 4248322  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 4241048 - 4241000
Alignment:
Q  141 tctttgtctcgttataactgttatatttgaccaagtgtaattataataa 189  Q
    ||||| |||| ||||||| |||| ||||||||||||||||| |||||||    
T  4241048 tctttatctcattataacggttagatttgaccaagtgtaatcataataa 4241000  T

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Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 4164817 - 4164991
Alignment:
Q  18 taaaacgcgcacacacaactgcgagatcctcactatgaaccatgacgaacgtgtccaactaaattttttggcattttatatttatggagtaattatataa 117  Q
    |||||| | ||||||||||| |||| |||| ||||||||||||||||||| |||||||||||||||||||||||||   ||| | |||||| ||||||||    
T  4164817 taaaactcacacacacaactacgaggtcctgactatgaaccatgacgaacatgtccaactaaattttttggcatttccaattgaaggagtagttatataa 4164916  T
Q  118 tttaagacatcgtttgactaaa---gtctttgtctcgttataactgttatatttgaccaagtgtaattataataa 189  Q
    ||||||| |||||||||| |||    |||||||||| ||||||  ||||||||||||||||||||||| ||||||    
T  4164917 tttaagatatcgtttgaccaaaactctctttgtctcattataatggttatatttgaccaagtgtaattttaataa 4164991  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 4163957 - 4164088
Alignment:
Q  61 gacgaacgtgtccaactaaattttttggcattttatatttatggagtaattatataatttaagacatcgtttgactaaag---tctttgtctcgttataa 157  Q
    |||||||||||| ||| |||| |||||||||||  | || |  ||||||||||||||||||||| |||||||||||||||   |||||||||| ||||||    
T  4163957 gacgaacgtgtctaacaaaatattttggcatttcttgttgaaagagtaattatataatttaagatatcgtttgactaaagctctctttgtctcattataa 4164056  T
Q  158 ctgttatatttgaccaagtgtaattataataa 189  Q
    | ||||||||||||||| ||||||||||||||    
T  4164057 cggttatatttgaccaaatgtaattataataa 4164088  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 1601785 - 1601726
Alignment:
Q  194 aatgctaaatcccgcgaagggatttctacgggaaacacgaaatagcagtattccatatca 253  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1601785 aatgctaaatcccacgaagggatttctacgggaaacacgaaatagcagtattccatatca 1601726  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 23567968 - 23567923
Alignment:
Q  287 aaattagtgtttggcggaaaacatgggtggattctgtgatattctt 332  Q
    |||||||||||||||||||| ||| ||||| || ||||||||||||    
T  23567968 aaattagtgtttggcggaaaccattggtgggttttgtgatattctt 23567923  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 35808976 - 35808901
Alignment:
Q  190 gagcaatgctaaatcccgcgaagggatttctacgggaaacacgaaatagcagtattccatatca--ctctttcttt 263  Q
    ||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||| |||||||  ||||||||||    
T  35808976 gagcaatgctaaatcccacgaaggaatttctatgcgaaacacgaaatagcagtatttcatatcaatctctttcttt 35808901  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 35808880 - 35808834
Alignment:
Q  285 ttaaattagtgtttggcggaaaacatgggtggattctgtgatattctt 332  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||    
T  35808880 ttaaattagtgtttggcggaaaacatgggtgggtt-tgtgatattctt 35808834  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 13866541 - 13866594
Alignment:
Q  190 gagcaatgctaaatcccgcgaagggatttctacgggaaacacgaaatagcagta 243  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  13866541 gagcaatgctaaattccacgaagggatttctacgggaaacacgaaatagtagta 13866594  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 26920869 - 26920816
Alignment:
Q  190 gagcaatgctaaatcccgcgaagggatttctacgggaaacacgaaatagcagta 243  Q
    ||||||||||||||||| |||||||||||||| | |||||||||||||||||||    
T  26920869 gagcaatgctaaatcccacgaagggatttctatgcgaaacacgaaatagcagta 26920816  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 7113314 - 7113243
Alignment:
Q  194 aatgctaaatcccgcgaagggatttctacgggaaacacgaaatagcagtattccatatca--ctctttcttt 263  Q
    ||||||||||||| ||||||||||||||| | |||||| |||||| ||||||||||||||  ||||||||||    
T  7113314 aatgctaaatcccacgaagggatttctacagaaaacacaaaataggagtattccatatcaatctctttcttt 7113243  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 7113224 - 7113196
Alignment:
Q  285 ttaaattagtgtttggcggaaaacatggg 313  Q
    |||||||||||||||||||||||||||||    
T  7113224 ttaaattagtgtttggcggaaaacatggg 7113196  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 39129631 - 39129706
Alignment:
Q  190 gagcaatgctaaatcccgcgaagggatttctacgggaaacacgaaatagcagtattccatatca--ctctttcttt 263  Q
    |||||| ||||||||||   |||| ||||||| |||||||||||||||||||||||||||||||  ||||||||||    
T  39129631 gagcaaggctaaatcccattaaggaatttctatgggaaacacgaaatagcagtattccatatcaatctctttcttt 39129706  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 39129725 - 39129772
Alignment:
Q  285 ttaaattagtgtttggcggaaaacatgggtggattctgtgatattctt 332  Q
    |||||||||||||||||||||||||||| ||| || ||||||||||||    
T  39129725 ttaaattagtgtttggcggaaaacatggatgggttttgtgatattctt 39129772  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 38928214 - 38928167
Alignment:
Q  285 ttaaattagtgtttggcggaaaacatgggtggattctgtgatattctt 332  Q
    |||||||| ||||||||||||||||| ||||| ||||| |||||||||    
T  38928214 ttaaattaatgtttggcggaaaacataggtgggttctgcgatattctt 38928167  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 38928309 - 38928265
Alignment:
Q  190 gagcaatgctaaatcccgcgaagggatttctacgggaaacacgaa 234  Q
    ||||||||||||||| |  |||||||||| |||||||||||||||    
T  38928309 gagcaatgctaaatctcatgaagggatttttacgggaaacacgaa 38928265  T

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