View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7839_high_10 (Length: 450)

Name: NF7839_high_10
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7839_high_10
NF7839_high_10
[»] chr5 (7 HSPs)
chr5 (244-431)||(32573273-32573460)
chr5 (108-202)||(32572951-32573045)
chr5 (13-89)||(24476261-24476336)
chr5 (51-92)||(32572851-32572892)
chr5 (14-56)||(29311876-29311918)
chr5 (13-42)||(32572824-32572853)
chr5 (48-84)||(29311087-29311123)
[»] scaffold0288 (2 HSPs)
scaffold0288 (23-85)||(22133-22195)
scaffold0288 (245-349)||(21553-21651)
[»] chr6 (2 HSPs)
chr6 (23-85)||(4661963-4662025)
chr6 (245-349)||(4661383-4661481)
[»] chr1 (3 HSPs)
chr1 (14-78)||(49318801-49318866)
chr1 (246-295)||(49319233-49319282)
chr1 (107-202)||(49318951-49319046)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 244 - 431
Target Start/End: Original strand, 32573273 - 32573460
Alignment:
Q  244 ctttcaaattttcaaatagagaagttgataaatgtcattgcgaagagcaatattaataatgatagtctcattgtgtaaactgaagcaggaaagaagtgtc 343  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32573273 ctttcaaattttcaaatagagaagttgataaatgtcatttcgaagagcaatattaataatgatagtctcattgtgtaaactgaagcaggaaagaagtgtc 32573372  T
Q  344 caacattgattccaccctcaatgccaccttaatccatatatacacaaacgactaacacacgtagctttatacaaatacatatgaggtg 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32573373 caacattgattccaccctcaatgccaccttaatccatatatacacaaacgactaacacacgtagctttatacaaatacatatgaggtg 32573460  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 32572951 - 32573045
Alignment:
Q  108 ttataatcaatgtgaatgtatttaaacaccaccacccactctcaactcagtcttctctaaatctgataggaagattgtagtgactcaactgagta 202  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  32572951 ttataatcaatgtgaatgtatttaaataccaccaaccactctcaactcagtcttctctaaatctgataggaaaattgtagtgactcagctgagta 32573045  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 24476336 - 24476261
Alignment:
Q  13 aatataaaaatcaaagtaacacatttcaaatttggttaaaacaaaaactagcatcaatgtatggtacaaaaaattac 89  Q
    ||||||||| ||||||||||| |||| || |||||||||||||||||||||||| || |||||||||||||| ||||    
T  24476336 aatataaaagtcaaagtaacaaattttaa-tttggttaaaacaaaaactagcattaaagtatggtacaaaaatttac 24476261  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 32572851 - 32572892
Alignment:
Q  51 aaacaaaaactagcatcaatgtatggtacaaaaaattactct 92  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32572851 aaacaaaaactagcatcaatgtatggtacaaaaaattactct 32572892  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 29311918 - 29311876
Alignment:
Q  14 atataaaaatcaaagtaacacatttcaaatttggttaaaacaa 56  Q
    |||||||| ||||||||||| ||||||||||||||||||||||    
T  29311918 atataaaagtcaaagtaacaaatttcaaatttggttaaaacaa 29311876  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 32572824 - 32572853
Alignment:
Q  13 aatataaaaatcaaagtaacacatttcaaa 42  Q
    ||||||||||||||||||||||||||||||    
T  32572824 aatataaaaatcaaagtaacacatttcaaa 32572853  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 29311123 - 29311087
Alignment:
Q  48 ttaaaacaaaaactagcatcaatgtatggtacaaaaa 84  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  29311123 ttaaaacaaaaactagcattaatgcatggtacaaaaa 29311087  T

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Target: scaffold0288 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 22195 - 22133
Alignment:
Q  23 tcaaagtaacacatttcaaatttggttaaaacaaaaactagcatcaatgtatggtacaaaaaa 85  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| |||||| |||| ||||||    
T  22195 tcaaagtaacaaattttaaatttggttaaaacaaaaactagcattaatgtagggtataaaaaa 22133  T

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Target: scaffold0288; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 349
Target Start/End: Complemental strand, 21651 - 21553
Alignment:
Q  245 tttcaaattttcaaatagagaagttgataaatgtcattgcgaagagcaatattaataatgatagtctcattgtgtaaactgaagcaggaaagaagtgtcc 344  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||       |||||||||||||  | ||| |||||||| |||| |||| |||||||    
T  21651 tttcaaattttctaatagagaagttggtaaatgtcattgcgaagag------aaataatgatagtccaagtgtataaactgatgcagcaaaggagtgtcc 21558  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 4662025 - 4661963
Alignment:
Q  23 tcaaagtaacacatttcaaatttggttaaaacaaaaactagcatcaatgtatggtacaaaaaa 85  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| |||||| |||| ||||||    
T  4662025 tcaaagtaacaaattttaaatttggttaaaacaaaaactagcattaatgtagggtataaaaaa 4661963  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 349
Target Start/End: Complemental strand, 4661481 - 4661383
Alignment:
Q  245 tttcaaattttcaaatagagaagttgataaatgtcattgcgaagagcaatattaataatgatagtctcattgtgtaaactgaagcaggaaagaagtgtcc 344  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||       |||||||||||||  | ||| |||||||| |||| |||| |||||||    
T  4661481 tttcaaattttctaatagagaagttggtaaatgtcattgcgaagag------aaataatgatagtccaagtgtataaactgatgcagcaaaggagtgtcc 4661388  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 49318801 - 49318866
Alignment:
Q  14 atataaaaatcaaagtaa-cacatttcaaatttggttaaaacaaaaactagcatcaatgtatggta 78  Q
    |||||||| ||||||||| || |||||||||||| | ||||||||||||||||| |||||||||||    
T  49318801 atataaaagtcaaagtaaacaaatttcaaatttgatcaaaacaaaaactagcattaatgtatggta 49318866  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 49319233 - 49319282
Alignment:
Q  246 ttcaaattttcaaatagagaagttgataaatgtcattgcgaagagcaata 295  Q
    ||||||||||| ||||||||||||| |||||| |||||| ||||||||||    
T  49319233 ttcaaattttctaatagagaagttggtaaatgccattgcaaagagcaata 49319282  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 202
Target Start/End: Original strand, 49318951 - 49319046
Alignment:
Q  107 gttataatcaatgtgaatgtatttaaacaccaccacccactctcaactcagtcttctctaaatctgataggaagattgtagtgactcaactgagta 202  Q
    ||||||||||||||||||||||||||| || |||||| ||  ||||||  || ||||||||||   | ||||| || ||||||||  |||||||||    
T  49318951 gttataatcaatgtgaatgtatttaaatacaaccacctacgttcaactgtgtattctctaaattcaacaggaaaatagtagtgacaaaactgagta 49319046  T

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