View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_high_16 (Length: 392)
Name: NF7839_high_16
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 24838361 - 24838721
Alignment:
| Q |
1 |
tattagtgctagtatattattggtcagatcaatagatagtttgttaaatctggaaaattagtgtagattcatttataatttatagaaaagttacaaaatc |
100 |
Q |
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| T |
24838361 |
tattagtgctagtatattattggtcagatcaatagatagtttgttaaatctggaaaattagtgtagattcatttataatttatagaaaagttacaaaatc |
24838460 |
T |
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| Q |
101 |
tatggactatatcatagcaataccttgtttaacaatcaatttgagttacaaaatatgcataacaatacctacgtgcattagaagccaaagcaatcatatt |
200 |
Q |
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| T |
24838461 |
tatggactatatcatagcaataccttgtttaacagtcattttgagttacaaaatatgcataacaatacctacgtgcattagaagccaaagcaatcatatt |
24838560 |
T |
|
| Q |
201 |
gtttaaccagcatatataataagtagaagccaactcaatcattttgtttaaccagcatatatataataatactacgtgcatattctgccaaagcaacaca |
300 |
Q |
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| T |
24838561 |
gtttaaccagcatatataataagtagaagccaactcaatcattttgtttaaccagcatatatataataatactacgtgcatattctgccaaagcaacaca |
24838660 |
T |
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| Q |
301 |
ataaaaggaaagcaaagtaccaaatttgatatcctaaaagttaatgcttcatttggtcttg |
361 |
Q |
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| T |
24838661 |
ataaaaggaaaacaaagtaccaaatttgatatcctaaaagttaatgcttcatttggtcttg |
24838721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 24263691 - 24263652
Alignment:
| Q |
224 |
tagaagccaactcaatcattttgtttaaccagcatatata |
263 |
Q |
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| T |
24263691 |
tagaagccaactcaatcattttgtctaaccagcatctata |
24263652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 1188219 - 1188259
Alignment:
| Q |
302 |
taaaaggaaagcaaagtaccaaatttgatatcctaaaagtt |
342 |
Q |
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| T |
1188219 |
taaaaggagaacaaagtaccaaatttgatatcctaaaagtt |
1188259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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