View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_high_17 (Length: 388)
Name: NF7839_high_17
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 45306065 - 45305703
Alignment:
| Q |
17 |
ggacatcaaaatagacaaagaaaagggtgaaagagggagcagttcggattgagaattagtgtgaaaggcacgagacgtaaaagagaacaataaatgagtg |
116 |
Q |
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| T |
45306065 |
ggacagcaaaatagacaaagaaaagggtgaaagagggagcagttcggattgagaattagtgtgaaaggcacgagacgtaaaagagaacaataaatgagtg |
45305966 |
T |
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| Q |
117 |
atgaggcgcatgataaccctcatcatcgacacgtcgtttttcattctctactcccaataacaaatcaatctcccagaattccacgctnnnnnnnnnnnnn |
216 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45305965 |
atgaggctcatgataaccctcatcatcgtcacgtcgtttttcattctctactcccaataacaaatcaatctcccagaattccacgct--tctctctctcc |
45305868 |
T |
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| Q |
217 |
nnncttaaagcctagtcaacctcatctctatcttttgtcccatattcatccaacaatattataccattctctctccctctcttgcaattcatgtgaccta |
316 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45305867 |
ctccttaaagcctagtcaacctcatctc-atcttttgtcccatattcatccaacaatattataccattct------ctctcttgcaattcatgtgaccta |
45305775 |
T |
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| Q |
317 |
gaagaagagttcattctattcagtcatcaatctcc--ctcctcaactaattaacaatggttatggtttttgt |
386 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45305774 |
gaagaagagttcattctattcagtcatcaatctccatctcctcaactaattaacaatggttatggtttttgt |
45305703 |
T |
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