View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_high_2 (Length: 636)
Name: NF7839_high_2
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 26708505 - 26708085
Alignment:
| Q |
18 |
cttttctgaaaaacacatcaaagctcaacacatttccgagctttctcttctccatcatctgcccgatgcattttcgtgtcacttttccccttcccctttc |
117 |
Q |
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| T |
26708505 |
cttttctgaaaaacacatcaaagctcaacacatttccgagctttctcttctccatcatctgcccgatgcattttcgtgtcacttttctccttcccctttc |
26708406 |
T |
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| Q |
118 |
atttgcatcttttcaaaattgtcccttcaaaaattatacctttttagagaaatttgtcgcttcaatattcagagtgctcagtggtcttgacgccatattt |
217 |
Q |
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| T |
26708405 |
atttgcatcttttcaaaattgtcccttcaaaaattatacctttttagataaatttgtcgcttcaatattcagagtgctcagtggtcttgacgccatattt |
26708306 |
T |
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| Q |
218 |
gtatcattctcaattctttgttatcaaatcctgtctttgactatatctaacaatgtaggtgtaggatttttgatataccttgtgcctattcatcaatttt |
317 |
Q |
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| T |
26708305 |
gaataattttcaattctttgttatcaaatcctctctttgactatatctaacaatgtaggtgtaggatttttggtataccttgtgcctattcatcaatttt |
26708206 |
T |
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| Q |
318 |
gttttacattttttagaaaaaggtaaggttcctattttaatgtttttaggttcatcttataagcgttcaacatggtgaaactgttattttgtgaaaaact |
417 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| | |
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| T |
26708205 |
gttttacattttttagaaaaaggtaaggtttctattttaatgtttttaggttcatgttataagcgttcaatatgatgaaactgttattttgtgaaaaatt |
26708106 |
T |
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| Q |
418 |
ttaaagtgtagtttttgtcaa |
438 |
Q |
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| T |
26708105 |
ttaaagtgtagtttttgtcaa |
26708085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 469 - 616
Target Start/End: Complemental strand, 26707994 - 26707847
Alignment:
| Q |
469 |
attcacttttaattcaaatatagattataatagtatctttnnnnnnnccaatttcaaataaaacaatatttgcattattatctctcttccatctactcca |
568 |
Q |
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| T |
26707994 |
attcacttttaattcaaatatagattataatagtatcgttaaaaaaaccaatttcaaataaaacaatatttgcattattatctctcttccatctactcaa |
26707895 |
T |
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| Q |
569 |
ttgattgtgtgcaaacaattaatgtcaaatatatattcgttttcaata |
616 |
Q |
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| T |
26707894 |
ttgattgtgtgcaaacaatcaatgtcaaatatatattcgttttcaata |
26707847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 520 - 614
Target Start/End: Original strand, 26706205 - 26706299
Alignment:
| Q |
520 |
tttcaaataaaacaatatttgcattattatctctcttccatctactccattgattgtgtgcaaacaattaatgtcaaatatatattcgttttcaa |
614 |
Q |
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| T |
26706205 |
tttcaaataaaagaatatttccattcttacctctcttccgtctaactcattgattgtgtgcaaataatcaatgtaaaaaatatattcattttcaa |
26706299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 530 - 603
Target Start/End: Original strand, 18443714 - 18443787
Alignment:
| Q |
530 |
aacaatatttgcattattatctctcttccatctactccattgattgtgtgcaaacaattaatgtcaaatatata |
603 |
Q |
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||||| ||||||||| ||| ||||||||||||||| | |||||||||||||||||||| ||| || |||||||| |
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| T |
18443714 |
aacaaaatttgcattcttacctctcttccatctacactattgattgtgtgcaaacaatcaatatcgaatatata |
18443787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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