View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_high_20 (Length: 355)
Name: NF7839_high_20
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 665843 - 665523
Alignment:
| Q |
17 |
gacatcaacttcaacatatttgtaataaaagtaaattgagtatgaatccaaccaaatcagggagattaaaagtttaatcgacagcattttagacaatcaa |
116 |
Q |
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| T |
665843 |
gacatcaacttcaacatatttgtaataaaagtaaattgagtataaatccaaccaaatcagggagattaaaagtttaatcgacagcattttagacaatcaa |
665744 |
T |
|
| Q |
117 |
tatctgttaacctatagcagtaaccaaaacctattatattcctctcaagtcattgaacgccggccacaggccccccgaaaactccactttttccacataa |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
665743 |
tatctgttaacctatagcagtaaccaaaacctgttatattcctctcaagtcattgaacgccggccacaggccccccgaaaactccactttttccacataa |
665644 |
T |
|
| Q |
217 |
aagcacactatccaaagctctaagctcaatgaacaaaagcatagaaaacaaaacacatcaatctcctaagtctagcataggtgtcccaatctctggattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
665643 |
aagcacactatccaaagctctaagctcaatgaacaaaagcatagaaaacaaaacacatcaatctcctaagtctagcataggtgtcccaatctctggattt |
665544 |
T |
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| Q |
317 |
tgtttcaatgcctcggcaaaa |
337 |
Q |
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||||||||||||||||||||| |
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| T |
665543 |
tgtttcaatgcctcggcaaaa |
665523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 698445 - 698391
Alignment:
| Q |
216 |
aaagcacactatccaaagctctaagctcaatgaacaaaagcata-gaaaacaaaa |
269 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
698445 |
aaagcacactatccaaagctctaagctcaatgatcaaaagcataggaaaacaaaa |
698391 |
T |
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