View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_high_22 (Length: 323)
Name: NF7839_high_22
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 34569030 - 34569333
Alignment:
| Q |
1 |
tatggtgcaatagtatacttcttttaaaatattaaaaatatatgccttcagatttcacatggtatttgatcggtgcatgataatacgagccaaatggagt |
100 |
Q |
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| T |
34569030 |
tatggtgcaatagtatacttcttttaaaatattaaaaatatatgccttcaaatttcacatggtatttgatctgtgcatgataatacgagccaaatggagt |
34569129 |
T |
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| Q |
101 |
gggttctaagattttgtgttgttgttgacgatggttgttctttacctgcacatggtggtctacctgcaaagacactttgacgtttaagttagcaaggtct |
200 |
Q |
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| T |
34569130 |
ggattctaagattttgtgttgttgttgacgatggttgttctttacctgcacatggtggtctacctgcaaagacactttgacgtttaagttagcaaggtct |
34569229 |
T |
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| Q |
201 |
ctagatgttttgaggtttatctcgaaatgagaatgtgtatcttattttgcatttggttgctctatttatctattcctacgtgttacacaagtgtaagtta |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34569230 |
ctagatgttttgaggtttatctcgaaatgaaaatgtgtatcttattttgcatttggttgctctatttatctattcctacgtgttacacaagtgtgagtta |
34569329 |
T |
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| Q |
301 |
tgtt |
304 |
Q |
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|||| |
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| T |
34569330 |
tgtt |
34569333 |
T |
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