View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7839_high_30 (Length: 251)

Name: NF7839_high_30
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7839_high_30
NF7839_high_30
[»] chr4 (13 HSPs)
chr4 (13-251)||(5565196-5565434)
chr4 (13-247)||(5605518-5605752)
chr4 (71-244)||(5885978-5886151)
chr4 (29-241)||(3749358-3749570)
chr4 (29-241)||(5858470-5858682)
chr4 (13-247)||(5847705-5847939)
chr4 (72-239)||(5582962-5583129)
chr4 (42-244)||(5894794-5894996)
chr4 (90-241)||(5852656-5852807)
chr4 (72-247)||(5570755-5570930)
chr4 (14-244)||(5553612-5553842)
chr4 (45-126)||(5613627-5613708)
chr4 (82-241)||(5559415-5559574)
[»] chr8 (1 HSPs)
chr8 (76-198)||(1485703-1485825)
[»] scaffold0454 (1 HSPs)
scaffold0454 (76-198)||(884-1007)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 5565434 - 5565196
Alignment:
Q  13 atgaatggagcagtcttttgttgccgttccgtgacctacaagaattaggcatgtcaagctgtggtctttcaggtccccttgattcttccctttcaaaact 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5565434 atgaatggagcagtcttttgttgccgttccgtgacctacaagaattaggcatgtcaagctgtggtctttcaggaccccttgattcttccctttcaaaact 5565335  T
Q  113 agagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatttgccaattttaaaaacctgaccaccctcagtcttgta 212  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5565334 agagaacctatcagtcattattcttggtgacaataatttttcatccccagtgccacaaacatttgccaattttaaaaacctgaccaccctcagtcttgta 5565235  T
Q  213 gattgtgggttgaccggtacatttccacaaaatattttt 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5565234 gattgtgggttgaccggtacatttccacaaaatattttt 5565196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 5605752 - 5605518
Alignment:
Q  13 atgaatggagcagtcttttgttgccgttccgtgacctacaagaattaggcatgtcaagctgtggtctttcaggtccccttgattcttccctttcaaaact 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||  ||||||| ||||||| |||||||||||||||||  |||   |    
T  5605752 atgaatggagcagtcttttgttgccgctccgtgacctacaagaattaggtatgtcagactgtggtttttcaggaccccttgattcttccctagcaaggtt 5605653  T
Q  113 agagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatttgccaattttaaaaacctgaccaccctcagtcttgta 212  Q
    ||||||| |||| ||||||  ||||| ||  || ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||       
T  5605652 agagaacttatctgtcattcttcttgatgggaacaatttttcatccccagtgccagaaacatttgccaattttaaaaacctaaccaccctcaatcttaac 5605553  T
Q  213 gattgtgggttgaccggtacatttccacaaaatat 247  Q
    |||||||| ||||| || |||||||||||||||||    
T  5605552 gattgtggattgactggaacatttccacaaaatat 5605518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 5885978 - 5886151
Alignment:
Q  71 ctgtggtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaa 170  Q
    |||| |||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||| || || ||||||||||||||||||||||||    
T  5885978 ctgtagtctatcaggaccccttgattcctccctttcaaaactagagaacctatcggtcattattcttggcgagaacaatttttcatccccagtgccacaa 5886077  T
Q  171 acatttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaa 244  Q
    ||||||||||||||||||||||| |||||||||| ||||  | |||| || ||||| | |||||||||||||||    
T  5886078 acatttgccaattttaaaaacctaaccaccctcaatcttcaaaattgcggattgacagatacatttccacaaaa 5886151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 241
Target Start/End: Complemental strand, 3749570 - 3749358
Alignment:
Q  29 tttgttgccgttccgtgacctacaagaattaggcatgtcaagctgtggtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtc 128  Q
    |||||||||||| |||||| | ||||||||  |||||||   ||||| | | ||||| |||||||||||||||||  ||| |||||||||||||||||||    
T  3749570 tttgttgccgttgcgtgacttgcaagaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagactagagaacctatcagtc 3749471  T
Q  129 attaatcttggtgacaataatttttcatccccagtgccacaaacatttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccg 228  Q
    |||| ||||| ||  || ||||||||||| ||||||||  ||||||||||||||||||||||| ||||||||||||||||||    |||||  |||||||    
T  3749470 attattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcgctttgtgaattgaccg 3749371  T
Q  229 gtacatttccaca 241  Q
    |||||||||||||    
T  3749370 gtacatttccaca 3749358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 241
Target Start/End: Complemental strand, 5858682 - 5858470
Alignment:
Q  29 tttgttgccgttccgtgacctacaagaattaggcatgtcaagctgtggtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtc 128  Q
    |||||||||||| ||  |||||||||||||  |||||||   ||||||||| | |||||||||||||||||||||  |||||||||||||||||||||||    
T  5858682 tttgttgccgttgcgaaacctacaagaattgagcatgtcttcctgtggtctattaggtccccttgattcttccctaacaaaactagagaacctatcagtc 5858583  T
Q  129 attaatcttggtgacaataatttttcatccccagtgccacaaacatttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccg 228  Q
    |||| ||||| ||| ||  |||||||||||||||| ||  |||||||||| |||||||||||| |||| ||||||||||||| |  |||||  ||  |||    
T  5858582 attattcttgatgagaactatttttcatccccagttcctgaaacatttgcaaattttaaaaacttgactaccctcagtcttgcattttgtgcattatccg 5858483  T
Q  229 gtacatttccaca 241  Q
    |||||||||||||    
T  5858482 gtacatttccaca 5858470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 5847705 - 5847939
Alignment:
Q  13 atgaatggagcagtcttttgttgccgttccgtgacctacaagaattaggcatgtcaagctgtggtctttcaggtccccttgattcttccctttcaaaact 112  Q
    |||||||||||| |  ||||||||| || |||||||| ||| | ||  |||||||    |||| ||| ||||| |||||||||||||||||  ||| |||    
T  5847705 atgaatggagcaatgctttgttgcctttgcgtgacctgcaaaagttgagcatgtctgattgtgatctatcaggaccccttgattcttccctaacaagact 5847804  T
Q  113 agagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatttgccaattttaaaaacctgaccaccctcagtcttgta 212  Q
    |||||||||  | ||||||  ||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |    
T  5847805 agagaacctgacggtcattgttcttggtgagaacaacttttcatccccagtgccacaaacatttgccaattttaaaaacctaaccaccctcaatcttcga 5847904  T
Q  213 gattgtgggttgaccggtacatttccacaaaatat 247  Q
     | ||||| |||| |||||||||||||||||||||    
T  5847905 aagtgtggattgatcggtacatttccacaaaatat 5847939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 239
Target Start/End: Original strand, 5582962 - 5583129
Alignment:
Q  72 tgtggtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaa 171  Q
    |||| ||| |||||||||||||||||||||||  ||| |||| |||||||||||||||||| ||||| ||  || |||||||||||||||||||||||||    
T  5582962 tgtgatctatcaggtccccttgattcttccctaacaagactaaagaacctatcagtcattattcttgatgggaacaatttttcatccccagtgccacaaa 5583061  T
Q  172 catttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttcca 239  Q
    ||||| ||||||| |||||  | |||||||||||||||| |  |||||| ||||| |||| |||||||    
T  5583062 cattttccaatttcaaaaaattaaccaccctcagtcttgcatcttgtggattgactggtaaatttcca 5583129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 5894794 - 5894996
Alignment:
Q  42 cgtgacctacaagaattaggcatgtcaagctgtggtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtg 141  Q
    |||||||||||||||||  ||||||| |  |||| | | |||||  |||||||||||||||| |||| |||| ||||||| |||||||||| ||||  |     
T  5894794 cgtgacctacaagaattgagcatgtctaattgtgatttgtcaggatcccttgattcttccctatcaagactacagaacctgtcagtcattattctttatc 5894893  T
Q  142 acaataatttttcatccccagtgccacaaacatttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccaca 241  Q
      || |||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||| ||||  | | ||||| |||| |||||||||||||||    
T  5894894 gaaacaatttttcatcctcattgccagaaacatttgccaattttaaaaacctaaccaccctcaatcttcgaaagtgtggattgatcggtacatttccaca 5894993  T
Q  242 aaa 244  Q
    |||    
T  5894994 aaa 5894996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 90 - 241
Target Start/End: Original strand, 5852656 - 5852807
Alignment:
Q  90 cttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatttgccaattttaaaa 189  Q
    |||||||||||||| |||||||||  ||||||||||||||||| ||||| |   || |||||||| ||||| || ||| |||||||||| |||||| |||    
T  5852656 cttgattcttccctatcaaaactaaggaacctatcagtcattattcttgataggaacaatttttcttcccccgttccagaaacatttgctaattttcaaa 5852755  T
Q  190 acctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccaca 241  Q
    ||||||||||||| ||||||  ||||||||| ||||| ||||||||||||||    
T  5852756 acctgaccacccttagtctttcagattgtggattgactggtacatttccaca 5852807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 5570755 - 5570930
Alignment:
Q  72 tgtggtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaa 171  Q
    |||| ||| ||||| ||||||  |||||||||  ||| |||| |||||||||||||||||| ||||| ||  ||  |||| ||||||| ||||||| |||    
T  5570755 tgtgatctatcaggacccctttcttcttccctaacaagactaaagaacctatcagtcattattcttgatgggaactatttctcatccctagtgccagaaa 5570854  T
Q  172 catttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaatat 247  Q
    ||||| ||||||||||||| || |||||||||||||||  |  |||||| ||||| ||||||||||||||||||||    
T  5570855 cattttccaattttaaaaaactaaccaccctcagtctttcatcttgtggattgacaggtacatttccacaaaatat 5570930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 5553842 - 5553612
Alignment:
Q  14 tgaatggagcagtcttttgttgccgttccgtgacctacaagaattaggcatgtcaagctgtggtctttcaggtccccttgattcttccctttcaaaacta 113  Q
    ||||||||||| |  |||||||||| |  |||| |||||||| ||  ||||||  | ||||| |||  |||| || || ||||||||||| |||||||||    
T  5553842 tgaatggagcaatgctttgttgccgctgtgtgaactacaagagttgagcatgtataactgtgatctagcagggccactagattcttccctatcaaaacta 5553743  T
Q  114 gagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatttgccaattttaaaaacctgaccaccctcagtcttgtag 213  Q
     | |||||||| ||||||| ||||| |   || |||||||| ||||| || ||| ||||||||||||||||| |||||||||||||||| ||||||  |     
T  5553742 aaaaacctatcggtcattattcttgataggaacaatttttcttcccccgttccagaaacatttgccaattttcaaaacctgaccacccttagtcttacat 5553643  T
Q  214 attgtgggttgaccggtacatttccacaaaa 244  Q
     |||||| || || |||||||||||||||||    
T  5553642 cttgtggattaacaggtacatttccacaaaa 5553612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 5613708 - 5613627
Alignment:
Q  45 gacctacaagaattaggcatgtcaagctgtggtctttcaggtccccttgattcttccctttcaaaactagagaacctatcag 126  Q
    |||||||||||| |  ||||||| | ||||  ||| ||||| || |||||||||||||||||||||||||||||||||||||    
T  5613708 gacctacaagaactgagcatgtctaactgtaatctatcaggacctcttgattcttccctttcaaaactagagaacctatcag 5613627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 241
Target Start/End: Complemental strand, 5559574 - 5559415
Alignment:
Q  82 caggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatttgccaa 181  Q
    |||| ||||||||||| || || |||| |||| ||||  ||||  |||||| ||||| ||  || |||||||| ||||| |||||  |||||||| ||||    
T  5559574 caggaccccttgattcatctctgtcaagactaaagaatttatcgatcattattcttgatggaaacaatttttcttccccggtgcctgaaacattttccaa 5559475  T
Q  182 ttttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccggtacatttccaca 241  Q
    ||| | |||  |||| ||||| ||||||| || |||| | ||||| | ||||||||||||    
T  5559474 tttcagaaatttgacaacccttagtcttgcagcttgtagattgactgatacatttccaca 5559415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 198
Target Start/End: Complemental strand, 1485825 - 1485703
Alignment:
Q  76 gtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatt 175  Q
    |||| ||||| ||| ||||||| |||||||||||||||||||||||| |  |||||| ||||| | | || ||| ||||||| ||| | ||| |||||||    
T  1485825 gtctatcaggacccgttgattcctccctttcaaaactagagaacctaaccatcattattcttgataagaacaatctttcatcgccaattccagaaacatt 1485726  T
Q  176 tgccaattttaaaaacctgacca 198  Q
    | |||||||||||||||||||||    
T  1485725 taccaattttaaaaacctgacca 1485703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 198
Target Start/End: Complemental strand, 1007 - 884
Alignment:
Q  76 gtctttcaggtccccttgattcttccctttcaaaactagagaacctatcagtcattaatcttggtgacaataatttttcatccccagtgccacaaacatt 175  Q
    |||| ||||| ||| ||||||| |||||||||||||||||||||||| |  |||||| ||||| | | || ||| ||||||| ||| | ||| |||||||    
T  1007 gtctatcaggacccgttgattcctccctttcaaaactagagaacctaaccatcattattcttgataagaacaatctttcatcgccaattccagaaacatt 908  T
Q  176 tgcc-aattttaaaaacctgacca 198  Q
    | || |||||||||||||||||||    
T  907 tacctaattttaaaaacctgacca 884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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