View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_high_33 (Length: 227)
Name: NF7839_high_33
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_high_33 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 15244316 - 15244090
Alignment:
| Q |
1 |
gatccaaataaatacataaaccagcaacatagtcacaatctttacacaatttggagtaatattaaagcaaaataaaaaatggaaataatagaaatggatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15244316 |
gatccaaataaatacataaaccagcaacatagtcagaatctttacacaatttggagtaatattaaagcaaaataaaaaatggaaataatagaaatggatg |
15244217 |
T |
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| Q |
101 |
gaagaagatgattcgcaaacagaagaacacgagttacaagacggcatagaagatgacgacagaaaacggaacagaaggaaaacgggacggcggttttgct |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| |
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| T |
15244216 |
gaagaagatgattcacaaacagaagaacacgagttacaagacggcatagaagatgacaacagaaaacggaatggaaggaaaacgggacggcggctttgct |
15244117 |
T |
|
| Q |
201 |
gaattctttagggtttgtgaagtttcc |
227 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
15244116 |
gaattcgttagggtttgtgaagtttcc |
15244090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 21390272 - 21390160
Alignment:
| Q |
1 |
gatccaaataaatacataaaccagcaacatagtcacaatcttta----cacaatttggagtaatattaaagca-aaataaaaaatggaa-ataatagaaa |
94 |
Q |
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||||| |||||||||||||||||||||||||| || ||| ||| ||||| ||| ||||||||||||||| |||| |||||||||| |||||||||| |
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| T |
21390272 |
gatcccaataaatacataaaccagcaacatagacataatatttttcagcacaacttg-agtaatattaaagcagaaattaaaaatggaatataatagaaa |
21390174 |
T |
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| Q |
95 |
tggatggaagaaga |
108 |
Q |
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| T |
21390173 |
tggatggaagaaga |
21390160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 32465247 - 32465359
Alignment:
| Q |
1 |
gatccaaataaatacataaaccagcaacatagtcacaatcttt----acacaatttggagtaatattaaagca-aaataaaaaatggaa-ataatagaaa |
94 |
Q |
| |
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||||| |||||||||||||||||||||||||| || || ||| |||||| ||| ||||||||||||| | |||| |||||||||| |||||||||| |
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| T |
32465247 |
gatcccaataaatacataaaccagcaacatagacataacatttttcaacacaacttg-agtaatattaaagtagaaattaaaaatggaatataatagaaa |
32465345 |
T |
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| Q |
95 |
tggatggaagaaga |
108 |
Q |
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|||||||||||||| |
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| T |
32465346 |
tggatggaagaaga |
32465359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 1397955 - 1398067
Alignment:
| Q |
1 |
gatccaaataaatacataaaccagcaacatagtcacaatcttta----cacaatttggagtaatattaaagca-aaataaaaaatggaa-ataatagaaa |
94 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| || ||| ||| ||||| || ||||||||||||||| |||| |||||||||| |||||||||| |
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| T |
1397955 |
gatcccaataaatacataaaccagccacatagacataatatttttcagcacaactta-agtaatattaaagcagaaattaaaaatggaatataatagaaa |
1398053 |
T |
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| Q |
95 |
tggatggaagaaga |
108 |
Q |
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|||||||||||||| |
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| T |
1398054 |
tggatggaagaaga |
1398067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 34030798 - 34030694
Alignment:
| Q |
9 |
taaatacataaaccagcaacatagtcacaatcttta----cacaatttggagtaatattaaagca-aaataaaaaatggaa-ataatagaaatggatgga |
102 |
Q |
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|||||||||||||||||||||||| || ||| ||| ||||| ||| ||||||||||||| | |||| |||||||||| |||||||||||||||||| |
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| T |
34030798 |
taaatacataaaccagcaacatagacataatatttttcagcacaacttg-agtaatattaaagtagaaattaaaaatggaatataatagaaatggatgga |
34030700 |
T |
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| Q |
103 |
agaaga |
108 |
Q |
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|||||| |
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| T |
34030699 |
agaaga |
34030694 |
T |
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