View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_high_38 (Length: 204)
Name: NF7839_high_38
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 52631439 - 52631265
Alignment:
| Q |
12 |
gagaagaaagtgagaccgagcagcaagaatcttcttttatctcatttctgcaaattggctttcgtacaaaatctttaaagtgaaaatcctgcttacgtca |
111 |
Q |
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| T |
52631439 |
gagaagaaagtgagaccgagcagcaagaatcttcttttatctcatttctgcaaattggctttcgtacaaaatctttaaagtgaaaatcctgcttacgtca |
52631340 |
T |
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| Q |
112 |
atccacaacacaacgctgctccaagattttgttctctttggacctagtttcccaacattttttctttctataacc |
186 |
Q |
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| T |
52631339 |
atccacaacacaacgctgctccaagattttgttctctttggacctagtttcccaacattttttctttctataacc |
52631265 |
T |
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