View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_high_7 (Length: 524)
Name: NF7839_high_7
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 204 - 505
Target Start/End: Original strand, 6262476 - 6262781
Alignment:
| Q |
204 |
aggtatacataaatttgtcttagttgtgtaaagaagcttgaaaaatcataatcaaaattacagaacaatgcattattttctattcctctcactgaacttt |
303 |
Q |
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| T |
6262476 |
aggtatacataaatttgtcttaattgtgtaaagaagcttgaaaaatcataatcaaaattacagaacaatgcattattttctattcctctcactgaacttt |
6262575 |
T |
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| Q |
304 |
tacatagttccttgaaattcttccatttcacattcacaaaatatacaaaca---caaatagaaaattaaacaatcacaag-nnnnnnntgcaccatctca |
399 |
Q |
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| T |
6262576 |
tacatagttccttgaaattcttccatttcagattcacaaaatatacaaacaccccaaatagaaaattaaacaatcgcaagaaaaaaaatgcaccatctca |
6262675 |
T |
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| Q |
400 |
tctatctatggtgtaaaaatcctttcactctatccatgcctgatccattaaattgagcttaatatcttctatgcaatcactagattccatatcggtttcc |
499 |
Q |
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| T |
6262676 |
tctatctatggtgtaaaaatcctttcactctatccatgcctgatccattaaattgagctgaatatcttctatgcaatcactagattccatatcggtttcc |
6262775 |
T |
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| Q |
500 |
aattct |
505 |
Q |
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|||||| |
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| T |
6262776 |
aattct |
6262781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 6261185 - 6261361
Alignment:
| Q |
10 |
aagaaaataattgtttttctttatgtaccactttgctatagaaaactgatgaagacataaagaggttctattttttgttgaattacggtaggtgtatttg |
109 |
Q |
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| T |
6261185 |
aagaaaataattgtttttctttatgtaccactttgctatagaaaactgatgaagacaaaaag--gttctattttttgttgaattatggtaggtgtatttg |
6261282 |
T |
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| Q |
110 |
caaatataccactttgctttatattgtttatcagtcacgcatcttagaagagaggtgaggaactttaagtgtaactaag |
188 |
Q |
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| T |
6261283 |
caaatataccactttgctatatattgtttatcagtcacacatcgtagaagagaggtgaggaactttaagtgtaactaag |
6261361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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