View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_11 (Length: 520)
Name: NF7839_low_11
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 84 - 314
Target Start/End: Complemental strand, 32104357 - 32104128
Alignment:
| Q |
84 |
tgatagatataatatattgatgatattaaacgagtgtatgaaattcaaaggtctttatttatcatccttgtactcttcatttatcatcgttgtactcata |
183 |
Q |
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| T |
32104357 |
tgataaatgtaatatgttgatgatgttaaacgagtgtatgaaattcaaaggtctttatttatcatccttgtactcttcatttatcattgttgtactcata |
32104258 |
T |
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| Q |
184 |
ataatctctagttgtgttttattactgtttgtgctacacnnnnnnnnnatatattatctcgtacaatcaaaaaccaagctagctggcgccctcaaaatga |
283 |
Q |
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| T |
32104257 |
ataatctctagttgtgttttattactgtttgtgctacac-ttttttttatatattatctcgtacaatcaaaaaccaagctagctggcgccctcaaaatga |
32104159 |
T |
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| Q |
284 |
ctaacacaactaactaacaaaccaaactatg |
314 |
Q |
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| T |
32104158 |
ctaacacaactaactaacaaaccaaactatg |
32104128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 346 - 504
Target Start/End: Complemental strand, 32104098 - 32103940
Alignment:
| Q |
346 |
gtagcacccaaaaactggctggtagaccaaccagtcaaaaaatactccctcctttgctacatcactcttcacttcatccttcaaattaaaccatttctct |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32104098 |
gtagcacccaaaaactggctggtagaccaaccagtcaaaaaatactccctcctttgctacatcactcttcacttcatccttcaaattaaaccatttctct |
32103999 |
T |
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| Q |
446 |
tttcttaaccaacaaaccttattctatatatgatcttatacaaacacatatagtagtat |
504 |
Q |
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| T |
32103998 |
tttcttaaccaataaaccttcttctatatatgatcttatacaaacacatatagtagtat |
32103940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 32104436 - 32104384
Alignment:
| Q |
5 |
attacttcgaaggaaaatgtttggtgtacatctcatataaatgtatacacctt |
57 |
Q |
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| T |
32104436 |
attacttcgaaggaaaatgtttggtatacacctcatataaatgtatacacctt |
32104384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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