View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_12 (Length: 474)
Name: NF7839_low_12
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 463
Target Start/End: Complemental strand, 34059618 - 34059172
Alignment:
| Q |
13 |
tcaattaatacatagttaatgatcaaattaagcaagctagttctcagtctcatctcagagatagataatattgacagttatcaacagtagtaactaggag |
112 |
Q |
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| T |
34059618 |
tcaattaatacatagttaatgatcaaattaagcaagctagttgtcagtctcatctcagagata----atattgacagttatcaacagtagtaactaggag |
34059523 |
T |
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| Q |
113 |
ccttgttttgattaagtatagatcatagacatgannnnnnnnaccatcaatttagaaagggaaacaactcaaggcaagagcagcagtaacatctaatctc |
212 |
Q |
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| T |
34059522 |
ccttgttttgattaagtatagatcatagacatgattttttttaccatgaatttagaaagggaaacaactcaaggcaagagcagcagtaacatctaatctc |
34059423 |
T |
|
| Q |
213 |
catgcaaaaccaccacagtccaatctccacgcatcacacggaactcttctctctttcccatacgcgtactgtactctcaccctgcacgtgaatccacttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34059422 |
catgcaaaaccaccacagtccaatctccacgcatcacacggaactcttctctctttcccatacgcgtactgtactctcaccctgcacgtgaatccacttt |
34059323 |
T |
|
| Q |
313 |
cactgtccggtaccctaaccaaccaaacttgcccttctcccaccatttccctgtatgcactattcctccacgtcactctcccataaccgtccgatataaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34059322 |
cactgtccggtaccctaaccaaccaaacttgcccttctcccaccatttccctgtatgcactattcctccacgtcactctcccataaccgtccgatataaa |
34059223 |
T |
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| Q |
413 |
tccaggacacgcgtccttctctagtttcactttcctctcctcgtcgtctct |
463 |
Q |
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| T |
34059222 |
tccaggacacgcgtccttctctagtttcactttcctctcctcgtcgtctct |
34059172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 42974606 - 42974544
Alignment:
| Q |
188 |
aagagcagcagtaacatctaatctccatgcaaaaccaccacagtccaatctccacgcatcaca |
250 |
Q |
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| T |
42974606 |
aagagcagctttaacatctaatctccatgcaaacccaccacaatccattctccacacatcaca |
42974544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 42974394 - 42974345
Alignment:
| Q |
379 |
tccacgtcactctcccataaccgtccgatataaatccaggacacgcgtcc |
428 |
Q |
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| T |
42974394 |
tccacgtcactctcccgtaaccgtccgatataaaccctggacacgtgtcc |
42974345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 8059528 - 8059460
Alignment:
| Q |
188 |
aagagcagcagtaacatctaatctccatgcaaaaccaccacagtccaatctccacgcatcacacggaac |
256 |
Q |
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||||||||| |||||||||| ||||||||||| |||||||| || |||||||| ||||||| ||||| |
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| T |
8059528 |
aagagcagctttaacatctaacctccatgcaaacccaccacactctaatctccaaacatcacaaggaac |
8059460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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