View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7839_low_14 (Length: 450)
Name: NF7839_low_14
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 2025696 - 2026014
Alignment:
| Q |
14 |
agaatatggagagcatatccataaattaacactatagcaaaagagaacctaaccttgaaaaaataactcaaatattgaaacgaatacacatttgatcaat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2025696 |
agaaaatggagagcatatccataaattaacactatagcagaagagaacctaaccttgaaaaaataactcaaatattgaaacgaatacacatttgatcaat |
2025795 |
T |
|
| Q |
114 |
agaatttttcggattctcagctataccggatggtatagaaaccaaaaggagtgtttctgctcattgtcgtagcttctggttgcattgatatgctgagtgt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| || ||| |
|
|
| T |
2025796 |
agaatttttcggattctcagctataccggatggtatagaaaccaaaaggagtgtttctgctcattgttgtagcttctgattgcattgagatgccgattgt |
2025895 |
T |
|
| Q |
214 |
tgtgatacggagcgtcgacatctgagttatacctgatgtttgcatggatatggaagaataagttatgtcatgtgccgcaatcttgggctacgacggggat |
313 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2025896 |
tgtgatatggagcgtcgacatctgagttatacctgatgtttgtatggatatggaaaaataagttatgtcatgtgccgcaatctcgggctacgacggggat |
2025995 |
T |
|
| Q |
314 |
attctttttaagaattatc |
332 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2025996 |
attctttttaagaattatc |
2026014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 37784008 - 37784068
Alignment:
| Q |
372 |
taatgttatgagaatgagattttgctcaagagtggcttcttgattccagaaagatcagtat |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37784008 |
taatgttatgagaatgagattttgctcaagagtggcttcttgattccagaaagatcagtat |
37784068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University