View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_15 (Length: 427)
Name: NF7839_low_15
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 29007523 - 29007114
Alignment:
| Q |
1 |
cttgaagtcaaagtacaagctcagtccaacaacactggaacttctcctccacctagttctccaccacgccctcattctcctcctagtccaccgaatggtg |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29007523 |
cttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagttctgcaccacgccctcattctcctcctagtccaccgaatggtg |
29007424 |
T |
|
| Q |
101 |
attctcctcctagtccaccacacagtgattctcctcctagtcctccagatgcacatgctaaagcgccttgtgattgttcttgtgcagatgagggtcgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007423 |
attctcctcctagtccaccacacagtgattctcctcctagtcctccagatgcacatgctaaagcgccttgtgattgttcttgtgcagatgagggtcgttt |
29007324 |
T |
|
| Q |
201 |
gggtgttccattgattacactcgtaatcatccgagctttcgcttggtcttannnnnnngttcacctttcagctatcaactagctagctcacactagacag |
300 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007323 |
gggtgttccattgattacactcgtaatcatcttagctttcgcttggtcttctttttttgttcacctttcagctatcaactagctagctcacactagacag |
29007224 |
T |
|
| Q |
301 |
tttatttcactgatgtgggtgtttggtcatttataatgacatattgtttagtacatatagattgtgatttggtttagtgactttagtcaattgttccaaa |
400 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007223 |
tttatttcactgatgtgggtgtttggtcattcataatgacatattgtttagtacatatagattgtgatttggtttagtgactttagtcaattgttccaaa |
29007124 |
T |
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| Q |
401 |
gtgagtgatg |
410 |
Q |
| |
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|||||||||| |
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| T |
29007123 |
gtgagtgatg |
29007114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 21465476 - 21465563
Alignment:
| Q |
5 |
aagtcaaagtacaagctcagtccaacaacactggaacttctcctccacctagttctccaccacgccctcattctcctcctagtccacc |
92 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
21465476 |
aagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctatttctccaccatgccctcattctcctcctagtccacc |
21465563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 21409730 - 21409776
Alignment:
| Q |
46 |
cctccacctagttctccaccacgccctcattctcctcctagtccacc |
92 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
21409730 |
cctccacctatttctccaccatgccctcattctcctcctagtccacc |
21409776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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