View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_16 (Length: 413)
Name: NF7839_low_16
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 133 - 395
Target Start/End: Original strand, 36679786 - 36680048
Alignment:
| Q |
133 |
tatattttaagactagaactgaaaataagagtgaatatggaaaaaagaattgatagtactaaccaggagtgtgaaaagaaaggagctcagggatgagagc |
232 |
Q |
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| T |
36679786 |
tatattttaagactggaactgaaaataagagtgaatatggaaaaaacaattgatagtactaaccaggagtgtgaaaagaaaggagctcagggatgagagc |
36679885 |
T |
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| Q |
233 |
atgtctaccaaggtgccaagaaacataaggagagataggacctcttttgaggatagaaaccatgtttttgactctgtctgagttttcaggatgtttttcc |
332 |
Q |
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| T |
36679886 |
atgtctaccaaggtgccaagaaacataaggagagataggacctcttttgaggatagaaaccatgtttttgactctgtctgagttttcaggatgtttttcc |
36679985 |
T |
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| Q |
333 |
aatatgtctaagaaaccggggtcaattcctgagtcaaaaactccattgccggtatcgtgtttg |
395 |
Q |
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| T |
36679986 |
aatatgtctaagaaaccggggtcaattcctgtgtcaaaaactccattgccggtatcgtgtttg |
36680048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 36679478 - 36679613
Alignment:
| Q |
1 |
atgtctaaattacattgtacatcaatacagtgtgcacaagaatatctattctagaaaataccaatcttcacaaacccaaaatttgacttccaatgttaaa |
100 |
Q |
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| T |
36679478 |
atgtctaaattacattgtacatcaatacagtgtgcacaagaatatctattctagaaaatatcaatcttcacaaacccaaaatttgacttccaatgttaaa |
36679577 |
T |
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| Q |
101 |
taactactaactaaagtgactgaagtcacatctata |
136 |
Q |
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| T |
36679578 |
taactactaactaaagtgactgaagtcacatctata |
36679613 |
T |
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