View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_17 (Length: 407)
Name: NF7839_low_17
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 40839144 - 40839532
Alignment:
| Q |
1 |
aggattgttaccgatcgaaggaaactcagtttctgtccccggctgcgaccatcgggggaagtcaagtctatagtctcagtgctatctacattgtgaagag |
100 |
Q |
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| T |
40839144 |
aggattgttaccgatcgaaggaaactcagcttctgtccccggctgcgaccatcggttgaagtcaagtctatagtctcagtgctatctacattgtgaagag |
40839243 |
T |
|
| Q |
101 |
ttgttggatggcccaaaggtctctgacccctaacattattcccaacttgccaaacatggttcaaccttgttatgttatatttatcagaaggcaaaactaa |
200 |
Q |
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| T |
40839244 |
ttgttggatggcccaaaggtctctgacccctaacattattcccaacttgccaaacatggttcaaccttgttatgttatatttatcagaaggcaaaactaa |
40839343 |
T |
|
| Q |
201 |
tctagcatagatagtataaaaatttgacccttgatcatgttgaatcgacatatctgacacattaaggccaatatcggtaggtaaaagactgcaacctctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40839344 |
tctagcatagatagtataaaaatttgacccttgatcatgttgaatcgacatatctgacacattaaggccaatatcggtaggtaaaagactacaacctctt |
40839443 |
T |
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| Q |
301 |
ttggttcctttagtaacatcataggtaccaactggcaaatatgtaccatggtatctgatccctatgattgcctttgttccaatcatttc |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40839444 |
ttggttcctttagtaacatcataggtaccaactggcaaatatgtaccatggtatctgatccctatgattgcctttgttccaatcatttc |
40839532 |
T |
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