View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_18 (Length: 402)
Name: NF7839_low_18
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 880077 - 880449
Alignment:
| Q |
13 |
aatatctttgagtgaaggtctcaattgttcctcacacatcttaacatactccaatgtgtctccaccacacttagaaaactcaaccactgccacctccggc |
112 |
Q |
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| T |
880077 |
aatatctttgagtgaaggtctcaattgttcctcacacatcttaacatactccaatgtgtctccaccacacttagaaaactcaaccactgccacctccggc |
880176 |
T |
|
| Q |
113 |
gccacctcaaatacctccattgtcatcgcgacctttccctttctcccctcccttgcgccctccattctcacgacaaactccttcttccctgttatcttca |
212 |
Q |
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| T |
880177 |
gccacctcaaatacctccattgtcatcgctacctttccctttctcccctcccttgcgccctccattctcacgacaaactccttcttccctgttatcttca |
880276 |
T |
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| Q |
213 |
aatttaacttcttcgccatcacctcaagtttctccaacattgttgaagccgaaaactttgatataaacatcgatggcaacctcttcctcgtctcaaataa |
312 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
880277 |
aatttaacttcttccccatcacctcaagtttctccaacattgttgaagccgaaaactttgatataaacatcgatggcaacctcttcctcgtctcaaataa |
880376 |
T |
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| Q |
313 |
actcctaagatcaaaaccatgtgacaacgatgaaattatctcgaatgcattataaaaaggacgagacggtttc |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
880377 |
actcctaagatcaaaaccatgtgacaacgatgaaattatctcgaatgcattataaaaaggacgagacggtttc |
880449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 45267572 - 45267918
Alignment:
| Q |
17 |
tctttgagtgaaggtctcaattgttcctcacacatcttaacatactccaatgtgtctccaccacacttagaaaactcaaccactgccacctccggcgcca |
116 |
Q |
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| T |
45267572 |
tctttgagagaaggtctaacttcatcttcacagaactttacatactcaagtgtgtctccagctgacttagaaaactctaccactgccacctccggtgcga |
45267671 |
T |
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| Q |
117 |
cctcaaatacctccattgtcatcgcgacctttccctttctcccctcccttgcgccctccattctcacgacaaactccttcttccctgttatcttcaaatt |
216 |
Q |
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||||||| ||||||| ||||| | | || ||||| |||||||| ||| |||| ||||||||| | || ||||||||||| |||| | ||||||| |
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| T |
45267672 |
cctcaaacacctccaccgtcatacccaatttccccttcctcccctctgttgtcccctgcattctcaccatgaaatccttcttccccgttaccctcaaatt |
45267771 |
T |
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| Q |
217 |
taacttcttcgccatcacctcaagtttctccaacattgttgaagccgaaaactttgatataaacatcgatggcaacctcttcctcgtctcaaataaactc |
316 |
Q |
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| T |
45267772 |
aagcttcttcgccacattctccagcttccccaccaccgcagaagcagacaacttggatataaacatcgaaggcgatctcttcctcgtctcaaacaaattc |
45267871 |
T |
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| Q |
317 |
ctaagatcaaaaccatgtgacaacgatgaaattatctcgaatgcatt |
363 |
Q |
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|| |||||||| |||||||| || |||||||||||||| |||||||| |
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| T |
45267872 |
cttagatcaaatccatgtgataaagatgaaattatctcaaatgcatt |
45267918 |
T |
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