View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_19 (Length: 394)
Name: NF7839_low_19
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 6093383 - 6093746
Alignment:
| Q |
13 |
aatattccaacttattcatcccttgaacatcttcgacggtaatcacaacaccaggacatcggaggtcgaggtattgcattttgctcaaattagatagcac |
112 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6093383 |
aatattccaacttattcatcccttgaacatcttcaacagtaatcacaacaccaggacatcggaggtcgaggtattgcattttgctcaaattagatagcac |
6093482 |
T |
|
| Q |
113 |
aaaccctgatttcatagtcaaattattgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6093483 |
aaaccctgatttcatagtcaaattattgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaa |
6093582 |
T |
|
| Q |
213 |
aatgtaatgaccaatcttgacaatgcttgtagctctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6093583 |
aatgtaatgaccaatcttgacaatgcttgtagctctcccaacgggggaattttttttagtgtattacatcctgttagtaacaaagaaataagagacctca |
6093682 |
T |
|
| Q |
313 |
acttagtcatagaatttggcaaagattcaagttttctattacaggatagatctagtattgatac |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6093683 |
acttagtcatagaatttggcaaagattcaagttttctattacaggatagatctagtattgatac |
6093746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 6179676 - 6179797
Alignment:
| Q |
138 |
ttgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatg |
237 |
Q |
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||||| || |||||||||||||||||||| ||| |||| |||||||| ||||||||| |||||||||||| | ||||| ||||| |||||||||||||| |
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| T |
6179676 |
ttgttgctagatagatcaagccatttcaaattggttagtttttccaagccttgtggtgcttcctcaatggaagtaaatgaaatgatcaatcttgacaatg |
6179775 |
T |
|
| Q |
238 |
cttgtagctctcccaatggggg |
259 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
6179776 |
cttgtagttctcccaatggggg |
6179797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 138 - 375
Target Start/End: Original strand, 6246509 - 6246746
Alignment:
| Q |
138 |
ttgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatg |
237 |
Q |
| |
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||||| || |||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||| | || |||||||||||||||||||| |
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| T |
6246509 |
ttgttgctagatagatcaagccatttcaaattgattagtttttccaatccttgtggtgcttcctcaatggaagtttttgaaatgaccaatcttgacaatg |
6246608 |
T |
|
| Q |
238 |
cttgtagctctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaacttagtcatagaatttggcaaaga |
337 |
Q |
| |
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||||||| ||||||||||| |||| | || || ||| | | | || || |||| ||||||||||||||| | | ||| ||| |||||||| || |
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| T |
6246609 |
cttgtagttctcccaatggtggaacatgtttcaatgaataacaacttttgagcactaaagtaataagagacctcaattcactcacagagtttggcaatga |
6246708 |
T |
|
| Q |
338 |
ttcaagttttctattacaggatagatctagtattgata |
375 |
Q |
| |
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||| || || ||||| |||||| |||||||||||||| |
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|
| T |
6246709 |
ttctagccttttattataggatatatctagtattgata |
6246746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 147 - 372
Target Start/End: Original strand, 6088141 - 6088363
Alignment:
| Q |
147 |
gatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatgcttgtagct |
246 |
Q |
| |
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|||||||||||||||||||| | ||| || ||||| ||||||||| |||| | ||||| ||| || |||||||||||||||||||| ||| | |
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| T |
6088141 |
gatagatcaagccatttcaaatg---tagtttatccaagccttgtggtgcttctttaatggaacagtctgaaatgaccaatcttgacaatgaccatagtt |
6088237 |
T |
|
| Q |
247 |
ctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaacttagtcatagaatttggcaaagattcaagttt |
346 |
Q |
| |
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|||||| |||||| | |||| || ||||||||||||||| ||||||| |||||| |||||||||| ||||| || ||||||||||| ||||| |
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| T |
6088238 |
ctcccactgggggcacatgtgtaagtgaatgacatcctgttagtactaaagaaacaagagatatcaacttagtgatagagttaggcaaagattctagttt |
6088337 |
T |
|
| Q |
347 |
tctattacaggatagatctagtattg |
372 |
Q |
| |
|
| ||||| ||||||||| ||||||| |
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| T |
6088338 |
tttattattggatagatcgagtattg |
6088363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 340
Target Start/End: Original strand, 6105291 - 6105484
Alignment:
| Q |
147 |
gatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatgcttgtagct |
246 |
Q |
| |
|
|||||||||||||||||||| ||| |||| |||||||| ||| |||||| || |||||||| | | | |||||||||||||||||||||||||| | |
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|
| T |
6105291 |
gatagatcaagccatttcaaattggttagtttttccaagcctagtggtaatttctcaatggaagtcaccgaaatgaccaatcttgacaatgcttgtaatt |
6105390 |
T |
|
| Q |
247 |
ctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaacttagtcatagaatttggcaaagattc |
340 |
Q |
| |
|
||||||||||||| | |||| | ||||| | | || || ||||||| |||||||||||||||||| || || | |||||||||||| |
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| T |
6105391 |
ctcccaatgggggcacatgtatcagtgaagcacatcttttgagaactaaagaaacaagagacctcaacttagtgatggagtctggcaaagattc |
6105484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 340
Target Start/End: Original strand, 6207306 - 6207428
Alignment:
| Q |
218 |
aatgaccaatcttgacaatgcttgtagctctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaactta |
317 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| | |||| || ||||||| |||||| ||||||| |||||||||||||||| |
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| T |
6207306 |
aatgaccaatcttgacaatctctgtaattctcccaatgggggcacatgtttcagtgaatcacatccttttagtattaaagaaacaagagacctcaactta |
6207405 |
T |
|
| Q |
318 |
gtcatagaatttggcaaagattc |
340 |
Q |
| |
|
|| || || | |||||||||||| |
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| T |
6207406 |
gtgatggagtctggcaaagattc |
6207428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 340
Target Start/End: Original strand, 6233724 - 6233846
Alignment:
| Q |
218 |
aatgaccaatcttgacaatgcttgtagctctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaactta |
317 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| | |||| || ||||||| |||||| ||||||| |||||||||||||||| |
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| T |
6233724 |
aatgaccaatcttgacaatctctgtaattctcccaatgggggcacatgtttcagtgaatcacatccttttagtattaaagaaacaagagacctcaactta |
6233823 |
T |
|
| Q |
318 |
gtcatagaatttggcaaagattc |
340 |
Q |
| |
|
|| || || | |||||||||||| |
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|
| T |
6233824 |
gtgatggagtctggcaaagattc |
6233846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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