View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7839_low_2 (Length: 643)
Name: NF7839_low_2
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 10 - 625
Target Start/End: Complemental strand, 35204294 - 35203678
Alignment:
| Q |
10 |
aagaatatatatgagtgtttgttgataaaacctgtcatgcacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgcc |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204294 |
aagaaaatatatgagtgtttgttgataaaacctgtcatgcacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgcc |
35204195 |
T |
|
| Q |
110 |
actaaatgacaacatataagtttgagtcttgcagtttaattcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacacca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204194 |
actaaatgacaacatataagtttgagtcttgcagcttaattcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacacca |
35204095 |
T |
|
| Q |
210 |
tttcaggatctatatgcttggtagtactactctttaacgtgatcttgtctaaagtagataataacaaaataatagcaatacactttgcatgaactaaaac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35204094 |
tttcaggatctatatgcttggtagtactactctttaacgtgatcttgtctaaagtagataataacaaaataatagcaatacactttgcatgaactaaaac |
35203995 |
T |
|
| Q |
310 |
tttcttaatagatgaaaaaccacacaccaaataccaaaccaatcaaagtaaataatattaat--nnnnnnnnnttctataccacaattatacccccaata |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
35203994 |
tttcttaatagatgaaaaaccacacaccaaataccaaaccaatcaaagtaaataatattaatcccccctcctcttctataccacaattatacccccaata |
35203895 |
T |
|
| Q |
408 |
accttcataacctaaccccttccaaatgttaagaaagttaacnnnnnnnngaaatcaacacattagatttcttttcatcatatagtgagtaaatccccca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35203894 |
accttcataacctaaccccttccaaatgttaagaaagttaac-aaaaaaagaaatcaacacattagatttcttttcatcatatagtgagtaaatccccca |
35203796 |
T |
|
| Q |
508 |
acttcaccaccctaactaatcacaataatacattagaaaaagtaaagaaaataaaggatatgtcattgcatatacacattacaaaattaatgaaaaagac |
607 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35203795 |
acctcaccaccctaactaatcacaataatacattagaaaaagtaaagaaaataaaggatatgtcattgcatatacacattacaaaattaatgaaaaagac |
35203696 |
T |
|
| Q |
608 |
caacttactcaatcaatc |
625 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
35203695 |
caacttactcaatcaatc |
35203678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 49 - 353
Target Start/End: Original strand, 55859371 - 55859675
Alignment:
| Q |
49 |
cacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagtttaa |
148 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
55859371 |
cacctagcactatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagcttaa |
55859470 |
T |
|
| Q |
149 |
ttcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacaccatttcaggatctatatgcttggtagtactactctttaacg |
248 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
55859471 |
ttcttattgtgtgtaacagttttgagccagactaccatagcccacatacagttccacaccatttcaggatctatatgcttggtagtactactctctaacg |
55859570 |
T |
|
| Q |
249 |
tgatcttgtctaaagtagataataacaaaataatagcaatacactttgcatgaactaaaactttcttaatagatgaaaaaccacacaccaaataccaaac |
348 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55859571 |
tgatcttgtctaaagtagataataataaaacaatagcaatacactttgcatgaactaaaagtttcttaatagatgaaaaaccacacaccaaataccaaac |
55859670 |
T |
|
| Q |
349 |
caatc |
353 |
Q |
| |
|
||||| |
|
|
| T |
55859671 |
caatc |
55859675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 467 - 569
Target Start/End: Original strand, 55859835 - 55859937
Alignment:
| Q |
467 |
acattagatttcttttcatcatatagtgagtaaatcccccaacttcaccaccctaactaatcacaataatacattagaaaaagtaaagaaaataaaggat |
566 |
Q |
| |
|
|||||| ||||| ||||||| ||||||| ||||||| ||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55859835 |
acattaaatttcctttcatcttatagtgggtaaatctaccaacctcaccaccctaagtaattacaataatacattagaaaaagtaaagaaaataaaggat |
55859934 |
T |
|
| Q |
567 |
atg |
569 |
Q |
| |
|
||| |
|
|
| T |
55859935 |
atg |
55859937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 49 - 353
Target Start/End: Complemental strand, 29275227 - 29274923
Alignment:
| Q |
49 |
cacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagtttaa |
148 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29275227 |
cacctagcactatggtttctagtcacctgaattgaatatagatgatgaaatgttccttgccactaaatgacaacatataagtttgagtcttgcagcttaa |
29275128 |
T |
|
| Q |
149 |
ttcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacaccatttcaggatctatatgcttggtagtactactctttaacg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
29275127 |
ttcctattgtgtgtaacagttttgagccagactaccatagcccacatacagttccacaccatttcaggatctatatgcttggtagtactactctctaacg |
29275028 |
T |
|
| Q |
249 |
tgatcttgtctaaagtagataataacaaaataatagcaatacactttgcatgaactaaaactttcttaatagatgaaaaaccacacaccaaataccaaac |
348 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29275027 |
tgatcttgtctaaagtagataataataaaacaatagcaatacactttgcatgaactaaaagtttcttaatagatgaaaaaccacacaccaaataccaaac |
29274928 |
T |
|
| Q |
349 |
caatc |
353 |
Q |
| |
|
||||| |
|
|
| T |
29274927 |
caatc |
29274923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 467 - 569
Target Start/End: Complemental strand, 29274732 - 29274630
Alignment:
| Q |
467 |
acattagatttcttttcatcatatagtgagtaaatcccccaacttcaccaccctaactaatcacaataatacattagaaaaagtaaagaaaataaaggat |
566 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||| ||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29274732 |
acattaaatttcctttcatcttatagtgagtaaatctaccaacctcaccaccctaagtaattacaataatacattagaaaaagtaaagaaaataaaggat |
29274633 |
T |
|
| Q |
567 |
atg |
569 |
Q |
| |
|
||| |
|
|
| T |
29274632 |
atg |
29274630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 7414456 - 7414509
Alignment:
| Q |
287 |
atacactttgcatgaactaaaactttcttaatagatgaaaaaccacacaccaaa |
340 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||| ||||||||| ||||||||||| |
|
|
| T |
7414456 |
atacactttgcatgaactaaaagtttatgaattgatgaaaaatcacacaccaaa |
7414509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 440
Target Start/End: Complemental strand, 29274869 - 29274812
Alignment:
| Q |
381 |
ttctataccacaattatacccccaataaccttcataacctaaccccttccaaatgttaag |
440 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
29274869 |
ttctataccacaattatacatccaataacc-ccataacctaa-cccttccaaatgttaag |
29274812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 49 - 353
Target Start/End: Complemental strand, 3822656 - 3822354
Alignment:
| Q |
49 |
cacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagtttaa |
148 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| ||||| |||| |
|
|
| T |
3822656 |
cacctagcactatagtttctaggcacctgaattgaatatagatgataatatgttccctgccactaaatgacagcatataagtttgagtcatgcagcttaa |
3822557 |
T |
|
| Q |
149 |
tt-cctattgtgtgtaacagttttgagccagactatcatagcccacatacag-ttccacaccatttcaggatctatatgcttggtagtactactctttaa |
246 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
3822556 |
ttccctattgtgtgtaatagttttgagccagactaccatagcccacatacagtttccacaccatttcaggatctatatgcttggcagtactactctctaa |
3822457 |
T |
|
| Q |
247 |
cgtgatcttgtctaaagtagataataacaaaataatagcaatacactttgcatgaactaaaactttcttaatagatgaaaaaccacacaccaaataccaa |
346 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3822456 |
cgtgagcttgtctaaagtagataatcacaaaacaatagcaat----tttgcatgaactaaaagtttcttaatagatgaaaaaccacacaccaaataccaa |
3822361 |
T |
|
| Q |
347 |
accaatc |
353 |
Q |
| |
|
||||||| |
|
|
| T |
3822360 |
accaatc |
3822354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 8e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 49 - 219
Target Start/End: Original strand, 46267346 - 46267515
Alignment:
| Q |
49 |
cacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagtttaa |
148 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46267346 |
cacctagcactatggtttctaggcacctgcattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagcttaa |
46267445 |
T |
|
| Q |
149 |
ttcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacaccatttcaggatc |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
46267446 |
ttcctattgtgtgtaacag-tttgagccagactatcatagtccacgtacagttccacaccatttcaggatc |
46267515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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