View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7839_low_22 (Length: 374)

Name: NF7839_low_22
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7839_low_22
NF7839_low_22
[»] scaffold0388 (1 HSPs)
scaffold0388 (19-218)||(11364-11561)
[»] chr2 (41 HSPs)
chr2 (19-217)||(34921392-34921587)
chr2 (18-218)||(19186842-19187040)
chr2 (44-218)||(9651424-9651597)
chr2 (138-218)||(24607317-24607396)
chr2 (137-218)||(43949982-43950062)
chr2 (137-220)||(41182957-41183040)
chr2 (18-180)||(24749933-24750093)
chr2 (131-216)||(435599-435683)
chr2 (137-218)||(41008665-41008745)
chr2 (239-293)||(43950175-43950229)
chr2 (18-194)||(27275997-27276171)
chr2 (138-194)||(1149739-1149795)
chr2 (242-293)||(435430-435481)
chr2 (141-194)||(1100820-1100873)
chr2 (242-290)||(24607513-24607561)
chr2 (242-293)||(7263104-7263155)
chr2 (242-293)||(20951007-20951058)
chr2 (242-293)||(41183158-41183209)
chr2 (242-292)||(3803504-3803554)
chr2 (64-194)||(5335138-5335268)
chr2 (64-194)||(10624131-10624261)
chr2 (18-180)||(39794255-39794415)
chr2 (242-292)||(41008862-41008912)
chr2 (138-194)||(213192-213248)
chr2 (242-290)||(27276312-27276360)
chr2 (64-176)||(38946032-38946144)
chr2 (242-293)||(39794050-39794101)
chr2 (138-180)||(3803307-3803349)
chr2 (138-180)||(7263310-7263352)
chr2 (138-176)||(41560300-41560338)
chr2 (138-218)||(12908164-12908244)
chr2 (223-292)||(34921675-34921743)
chr2 (242-293)||(1101013-1101063)
chr2 (128-218)||(45475668-45475758)
chr2 (242-280)||(1149556-1149594)
chr2 (18-108)||(43949891-43949979)
chr2 (243-293)||(45475528-45475577)
chr2 (21-110)||(1100719-1100806)
chr2 (242-291)||(38945826-38945875)
chr2 (239-291)||(19187155-19187206)
chr2 (242-274)||(24749755-24749787)
[»] chr3 (40 HSPs)
chr3 (18-218)||(6505596-6505793)
chr3 (18-218)||(7837850-7838047)
chr3 (18-194)||(7842635-7842809)
chr3 (138-218)||(29929685-29929762)
chr3 (138-218)||(29978839-29978916)
chr3 (239-290)||(29929517-29929568)
chr3 (239-290)||(29978671-29978722)
chr3 (242-293)||(7837683-7837734)
chr3 (239-290)||(29918272-29918323)
chr3 (239-290)||(29967425-29967476)
chr3 (39-194)||(48250509-48250664)
chr3 (138-218)||(9582751-9582830)
chr3 (138-194)||(13747460-13747516)
chr3 (138-218)||(46992971-46993049)
chr3 (242-293)||(2745166-2745217)
chr3 (242-293)||(14398622-14398673)
chr3 (138-197)||(21955943-21956002)
chr3 (242-293)||(48250804-48250855)
chr3 (242-293)||(50953363-50953414)
chr3 (64-194)||(9429513-9429643)
chr3 (18-194)||(14398810-14398985)
chr3 (39-108)||(28610774-28610842)
chr3 (138-194)||(6741140-6741196)
chr3 (64-176)||(8160661-8160773)
chr3 (64-180)||(16444889-16445005)
chr3 (138-194)||(30947393-30947449)
chr3 (242-293)||(16444683-16444734)
chr3 (242-293)||(23443067-23443118)
chr3 (64-194)||(3949008-3949138)
chr3 (18-180)||(23442754-23442914)
chr3 (242-291)||(7842951-7843000)
chr3 (18-83)||(29929765-29929828)
chr3 (18-83)||(29978919-29978982)
chr3 (242-310)||(6740933-6741000)
chr3 (242-293)||(46993165-46993216)
chr3 (138-180)||(50953570-50953612)
chr3 (39-100)||(9582842-9582903)
chr3 (242-291)||(13747653-13747702)
chr3 (242-293)||(6505910-6505962)
chr3 (18-94)||(36817144-36817218)
[»] chr4 (35 HSPs)
chr4 (38-194)||(18580969-18581126)
chr4 (18-197)||(51644119-51644297)
chr4 (18-218)||(44049353-44049550)
chr4 (18-218)||(4976021-4976218)
chr4 (39-218)||(38464409-38464587)
chr4 (39-218)||(11494800-11494977)
chr4 (90-218)||(17139859-17139987)
chr4 (137-218)||(3449816-3449896)
chr4 (138-218)||(21471157-21471237)
chr4 (64-217)||(9890252-9890405)
chr4 (18-180)||(13173524-13173684)
chr4 (242-293)||(4979851-4979902)
chr4 (243-293)||(3450015-3450065)
chr4 (137-217)||(4979664-4979740)
chr4 (48-109)||(11494986-11495047)
chr4 (138-194)||(4768930-4768986)
chr4 (239-291)||(21470993-21471045)
chr4 (239-293)||(38464700-38464751)
chr4 (239-290)||(4768743-4768794)
chr4 (242-293)||(4975853-4975904)
chr4 (242-293)||(9890081-9890132)
chr4 (242-293)||(15999734-15999785)
chr4 (242-293)||(19073590-19073641)
chr4 (64-194)||(3404077-3404207)
chr4 (64-194)||(49566141-49566271)
chr4 (239-292)||(11494632-11494685)
chr4 (242-293)||(1087921-1087972)
chr4 (242-293)||(44049186-44049237)
chr4 (239-293)||(18581264-18581317)
chr4 (39-75)||(3449770-3449806)
chr4 (239-290)||(51644431-51644481)
chr4 (138-180)||(19073393-19073435)
chr4 (18-83)||(4769003-4769066)
chr4 (242-291)||(13173323-13173372)
chr4 (138-175)||(41023682-41023719)
[»] scaffold0057 (1 HSPs)
scaffold0057 (48-218)||(22893-23061)
[»] scaffold0340 (1 HSPs)
scaffold0340 (55-216)||(837-997)
[»] chr6 (21 HSPs)
chr6 (44-218)||(7361417-7361590)
chr6 (137-218)||(7363054-7363134)
chr6 (85-218)||(26702072-26702205)
chr6 (18-218)||(2052249-2052447)
chr6 (18-131)||(18606352-18606463)
chr6 (142-217)||(31146631-31146705)
chr6 (239-293)||(18606132-18606186)
chr6 (18-194)||(28250161-28250330)
chr6 (242-314)||(2052561-2052633)
chr6 (64-176)||(18347311-18347423)
chr6 (242-293)||(7363251-7363302)
chr6 (239-293)||(23985939-23985992)
chr6 (242-286)||(7361256-7361300)
chr6 (138-194)||(13388456-13388512)
chr6 (145-218)||(23985750-23985822)
chr6 (138-194)||(1612487-1612543)
chr6 (247-293)||(13479791-13479836)
chr6 (242-291)||(28249975-28250024)
chr6 (242-291)||(31146463-31146511)
chr6 (242-290)||(18347106-18347154)
chr6 (170-218)||(18606300-18606347)
[»] chr5 (36 HSPs)
chr5 (44-218)||(33993534-33993707)
chr5 (70-218)||(28387523-28387670)
chr5 (72-218)||(18538005-18538150)
chr5 (18-220)||(31098555-31098754)
chr5 (18-218)||(27867467-27867665)
chr5 (18-180)||(11033084-11033244)
chr5 (44-194)||(34123566-34123716)
chr5 (137-218)||(4203948-4204028)
chr5 (77-194)||(13567780-13567897)
chr5 (242-293)||(28387356-28387407)
chr5 (138-217)||(30354136-30354213)
chr5 (242-293)||(34123857-34123908)
chr5 (18-180)||(38859823-38859983)
chr5 (138-194)||(7021624-7021680)
chr5 (138-194)||(25896822-25896878)
chr5 (242-293)||(1035271-1035322)
chr5 (64-194)||(37820547-37820677)
chr5 (239-292)||(18538267-18538319)
chr5 (242-291)||(34077857-34077906)
chr5 (18-194)||(34078044-34078219)
chr5 (242-293)||(7800921-7800972)
chr5 (242-293)||(31098869-31098920)
chr5 (242-293)||(38860137-38860188)
chr5 (239-289)||(33993372-33993421)
chr5 (18-103)||(4203856-4203940)
chr5 (242-291)||(7021818-7021867)
chr5 (77-194)||(28886098-28886215)
chr5 (242-293)||(4204145-4204196)
chr5 (143-218)||(7800731-7800805)
chr5 (242-293)||(11033397-11033448)
chr5 (239-290)||(30354328-30354378)
chr5 (239-293)||(21979654-21979707)
chr5 (242-291)||(25897014-25897063)
chr5 (242-291)||(27867780-27867829)
chr5 (242-291)||(28886353-28886402)
chr5 (242-291)||(37820814-37820863)
[»] chr8 (33 HSPs)
chr8 (128-217)||(7168209-7168297)
chr8 (122-217)||(18206040-18206134)
chr8 (18-218)||(39752645-39752842)
chr8 (67-218)||(22577920-22578071)
chr8 (137-218)||(2146695-2146775)
chr8 (141-218)||(43370035-43370111)
chr8 (138-194)||(45454678-45454734)
chr8 (18-193)||(20547048-20547221)
chr8 (18-83)||(7168290-7168354)
chr8 (142-194)||(35966493-35966545)
chr8 (242-293)||(31957895-31957946)
chr8 (242-293)||(35966684-35966735)
chr8 (242-293)||(41744655-41744706)
chr8 (242-292)||(2146891-2146941)
chr8 (239-293)||(18205874-18205927)
chr8 (64-194)||(32378587-32378717)
chr8 (64-194)||(32432542-32432672)
chr8 (64-180)||(1115035-1115151)
chr8 (138-194)||(8423573-8423629)
chr8 (138-194)||(30305309-30305365)
chr8 (242-293)||(43369868-43369919)
chr8 (242-293)||(45454468-45454519)
chr8 (18-108)||(2146593-2146682)
chr8 (64-194)||(7340344-7340474)
chr8 (223-256)||(43689905-43689938)
chr8 (257-293)||(7168176-7168212)
chr8 (242-293)||(1114830-1114880)
chr8 (242-293)||(35389596-35389647)
chr8 (242-293)||(39752958-39753009)
chr8 (18-109)||(43370117-43370206)
chr8 (239-293)||(22577753-22577806)
chr8 (18-75)||(43689775-43689830)
chr8 (18-94)||(35966371-35966445)
[»] chr1 (50 HSPs)
chr1 (77-218)||(21944055-21944195)
chr1 (18-218)||(22345514-22345712)
chr1 (122-194)||(36076284-36076356)
chr1 (103-218)||(19498817-19498930)
chr1 (137-218)||(8459837-8459917)
chr1 (18-105)||(36076207-36076293)
chr1 (39-194)||(50117416-50117570)
chr1 (18-127)||(19498707-19498815)
chr1 (18-194)||(37015170-37015344)
chr1 (49-131)||(21944001-21944083)
chr1 (18-180)||(22398086-22398246)
chr1 (223-293)||(36076474-36076543)
chr1 (239-290)||(1654835-1654886)
chr1 (64-194)||(20349708-20349838)
chr1 (18-108)||(46973542-46973630)
chr1 (44-194)||(23914108-23914259)
chr1 (239-287)||(19054181-19054229)
chr1 (128-218)||(4516262-4516352)
chr1 (242-293)||(5078002-5078053)
chr1 (242-293)||(8460031-8460082)
chr1 (242-293)||(50117712-50117763)
chr1 (64-194)||(3948128-3948258)
chr1 (239-293)||(19499044-19499097)
chr1 (64-194)||(38775792-38775922)
chr1 (239-293)||(46973291-46973344)
chr1 (64-180)||(6561843-6561959)
chr1 (138-217)||(13174093-13174172)
chr1 (64-180)||(13629685-13629801)
chr1 (138-194)||(29356432-29356488)
chr1 (246-293)||(9711589-9711636)
chr1 (242-293)||(13629479-13629530)
chr1 (242-293)||(23913918-23913969)
chr1 (138-177)||(44465852-44465891)
chr1 (242-293)||(44621052-44621103)
chr1 (64-194)||(3983364-3983494)
chr1 (242-292)||(4516094-4516143)
chr1 (138-180)||(5078208-5078250)
chr1 (137-218)||(7980878-7980960)
chr1 (239-289)||(13173927-13173976)
chr1 (239-292)||(7981071-7981123)
chr1 (242-291)||(29356625-29356674)
chr1 (242-291)||(41453902-41453951)
chr1 (242-291)||(44465660-44465709)
chr1 (138-194)||(15047559-15047615)
chr1 (242-293)||(22397881-22397932)
chr1 (242-293)||(30905832-30905882)
chr1 (242-293)||(37014979-37015030)
chr1 (18-194)||(41454088-41454261)
chr1 (138-180)||(44620856-44620898)
chr1 (128-218)||(46973457-46973548)
[»] scaffold0360 (3 HSPs)
scaffold0360 (138-218)||(7054-7133)
scaffold0360 (239-274)||(7245-7280)
scaffold0360 (18-89)||(6971-7040)
[»] chr7 (15 HSPs)
chr7 (138-218)||(47061182-47061261)
chr7 (242-293)||(29593289-29593340)
chr7 (64-180)||(15059896-15060012)
chr7 (242-293)||(42499496-42499547)
chr7 (242-293)||(47741825-47741876)
chr7 (239-293)||(47061014-47061068)
chr7 (138-194)||(30786802-30786858)
chr7 (138-194)||(45763657-45763713)
chr7 (64-194)||(18105651-18105781)
chr7 (64-194)||(43623812-43623942)
chr7 (166-218)||(47741992-47742043)
chr7 (77-176)||(618429-618528)
chr7 (39-94)||(47061271-47061325)
chr7 (242-291)||(618685-618734)
chr7 (239-292)||(36185898-36185950)
[»] scaffold0147 (3 HSPs)
scaffold0147 (137-218)||(597-677)
scaffold0147 (243-293)||(796-846)
scaffold0147 (39-75)||(551-587)
[»] scaffold0794 (2 HSPs)
scaffold0794 (137-220)||(5528-5611)
scaffold0794 (242-293)||(5359-5410)
[»] scaffold0219 (2 HSPs)
scaffold0219 (18-218)||(15931-16128)
scaffold0219 (242-293)||(15765-15816)
[»] scaffold0038 (2 HSPs)
scaffold0038 (18-194)||(50323-50492)
scaffold0038 (242-291)||(50137-50186)
[»] scaffold0361 (1 HSPs)
scaffold0361 (138-220)||(4140-4221)
[»] scaffold0116 (2 HSPs)
scaffold0116 (138-194)||(11551-11607)
scaffold0116 (242-293)||(11362-11413)
[»] scaffold0494 (2 HSPs)
scaffold0494 (242-293)||(944-995)
scaffold0494 (64-180)||(1150-1266)
[»] scaffold0341 (1 HSPs)
scaffold0341 (64-180)||(17033-17149)
[»] scaffold0744 (2 HSPs)
scaffold0744 (242-293)||(358-409)
scaffold0744 (138-180)||(161-203)


Alignment Details
Target: scaffold0388 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 11364 - 11561
Alignment:
Q  19 gtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttacttt 118  Q
    |||||||||||||| || ||||||||||||||||||||||||||  ||||||||||| ||||||| |||||||||| ||||||||||||||||||||||     
T  11364 gtagctgccatttt-ttcggtgtgaaaattttttcacaagtattcttcggtaccttactaccgaggttttcctcggaagtaaactaccgaaatttacttc 11462  T
Q  119 ggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||| |||| |||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  11463 ggtagtaatctaccgaggattcccatgacagagttctacgtaactgacgtagatacctataacaaaaccaaaaaat-aaaccgattaaaatgctcaatac 11561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 34921392 - 34921587
Alignment:
Q  19 gtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttacttt 118  Q
    ||||||||| |||| |||| |||||||||||| ||||||||||| |||||||||||| ||| ||| |||||||||| |||||||||  ||||||||||||    
T  34921392 gtagctgccgtttt-tttgttgtgaaaatttt-tcacaagtattcctcggtaccttactactgaggttttcctcggcagtaaactattgaaatttacttt 34921489  T
Q  119 ggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||    
T  34921490 ggtagtaagctactgaggattcccatgacagagtcctacgtaactgacgtagatacccataacaaaaccaaaaaat-gaacggattaaaatgctcaata 34921587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 19186842 - 19187040
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || ||||||| ||  ||||||||||||||||||||||||| | ||||||| |||||||||| |||||||||||||| |||||||    
T  19186842 agtagctgccatttt-ttcggtgtgacaaaattttcacaagtatttctcggtacctaactaccgagcttttcctcggcagtaaactaccgaagtttactt 19186940  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
     ||||||||  ||| |||  ||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  19186941 cggtagtaaagtaccgaggattcccatgatagggttctacgtaactgacgtagaaacccataacaaaaccaaaaaat-aaaccgattaaaatgctcaata 19187039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 44 - 218
Target Start/End: Complemental strand, 9651597 - 9651424
Alignment:
Q  44 aaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttccca 143  Q
    |||||||||||||||||||||||||||||| | ||||||| |||||||||  | || |||| |||| | | | | || ||| | ||   ||| |||||||    
T  9651597 aaattttttcacaagtatttctcggtacctaactaccgaggttttcctcgacattacactatcgaagtattcctcggcagttaactgtcgaggtttccca 9651498  T
Q  144 tgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||  ||| ||||||||||||| ||||    
T  9651497 tgacagagttctacgtaactgacgtagttacccataacaaaaccaaaaaat-gaacggattaaaatgctcgatac 9651424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 24607317 - 24607396
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  24607317 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat-gaacggattaaaatgctcaatac 24607396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 43949982 - 43950062
Alignment:
Q  137 tttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  43949982 tttcccatgacagagttctacgtaactaacgtagatacccataacaaaaccaaaaaat-gaacggattaaaatgctcaatac 43950062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 41182957 - 41183040
Alignment:
Q  137 tttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatacat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||  ||||||||| |||||||||    
T  41182957 tttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaaatgaacatattaaaatgttcaatacat 41183040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 24750093 - 24749933
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||||||||| ||||||  || ||||| |||||| ||||||| |||||||||| | || ||||||||| ||| | |    
T  24750093 agtagctgccatttt-ttcgttgtgaaaattttt-cacaagagttcctcggcaccttactaccgaggttttcctcggcactacactaccgaagttttcct 24749996  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataa 180  Q
     |||||| | || | |||  |||||||||||| ||||||||||||||||||||||||||||||    
T  24749995 cggtagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccataa 24749933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 435683 - 435599
Alignment:
Q  131 ctgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaat 216  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||| ||||||||||||||||    
T  435683 ctgaggtttcccatgacagagttctacgtaagtgacgtaaatacccataacaaaaccaaaaaat-gaacggattaaaatgctcaat 435599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 41008665 - 41008745
Alignment:
Q  137 tttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| |||||||||||| |||||    
T  41008665 tttcccatgacagagttctacgtaactgacatagatacccataacaaaaccaaaaaat-gaacagattaaaatgcttaatac 41008745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 43950175 - 43950229
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43950175 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgtctgtttcatctg 43950229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 27275997 - 27276171
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||||||||| ||||||  || ||||| |||||| ||||||| ||||||| || | || ||||||||||||| | |    
T  27275997 agtagctgccatttt-ttcgttgtgaaaattttt-cacaagagttcctcggcaccttactaccgaggttttccttggcactacactaccgaaattttcct 27276094  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
     || ||| | || | ||   |||||||||||| ||||||||||| |||||||||||||||||| | | |||||||||    
T  27276095 cggcagttaactgccgaagattcccatgacagggttctacgtaattgacgtagatacccataaaatagccaaaaaat 27276171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 1149795 - 1149739
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||    
T  1149795 ttcccatgacagggttctacgtaactgacgtagaaacccataacataaccaaaaaat 1149739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 435481 - 435430
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  435481 gaagttgatgatgaaaatagtgtgtagggggagcaggtggctgtttcatctg 435430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 1100820 - 1100873
Alignment:
Q  141 ccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||||||||||||||||||||| |||||||||| | |||||||||    
T  1100820 ccatgacagagttctacgtaactgacgtagaaacccataacatatccaaaaaat 1100873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 24607513 - 24607561
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcat 290  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  24607513 gaagttgatgatgaaaatagtatgtagggggagcaggtgactgtttcat 24607561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 7263155 - 7263104
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  7263155 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctg 7263104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 20951007 - 20951058
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  20951007 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctg 20951058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 41183158 - 41183209
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  41183158 gaagttgatgatgaaaatagtatgtagggggagcaggtggctgtttcatctg 41183209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 3803504 - 3803554
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatct 292  Q
    ||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  3803504 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatct 3803554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 5335268 - 5335138
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||||||||   ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  5335268 ctcggtacctagctaccgaggttttcctcggcactaaacaaccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 5335169  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  5335168 gacgtagatacccctaaaacacccaaaaaat 5335138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 10624131 - 10624261
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||||||||   ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  10624131 ctcggtacctagctaccgaggttttcctcggcactaaacaaccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 10624230  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  10624231 gacgtagatacccctaaaacacccaaaaaat 10624261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 39794415 - 39794255
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||||||||| ||||||  || ||||| |||||  ||||||| ||||||||||   || ||||||||| ||| | |    
T  39794415 agtagctgccatttt-ttcgttgtgaaaattttt-cacaagagttcctcggcaccttgctaccgaggttttcctcggcgctatactaccgaagtttccct 39794318  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataa 180  Q
     || ||| | || | |||  |||||||||||| ||||| ||||||| ||||||||||||||||    
T  39794317 cggcagttaactgccgaggattcccatgacagggttctgcgtaactcacgtagatacccataa 39794255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 41008862 - 41008912
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatct 292  Q
    ||||||||||||||||||||||||||||||||| | ||| |||||||||||    
T  41008862 gaagttgatgatgaaaatagtgtgtagggggagcatgtggctgtttcatct 41008912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 213192 - 213248
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| |||||||||||||||||||||||||| ||| | | |||||||||    
T  213192 ttcccatgacagggttctacgtaactgacgtagatacccctaaaacacccaaaaaat 213248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 27276312 - 27276360
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcat 290  Q
    ||||||||||| ||||||||||||||||||||| ||||| |||||||||    
T  27276312 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcat 27276360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 38946144 - 38946032
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||||||||   ||||||| |||||||||| | ||||| |||||| ||| | | |||||| | || | |||  || ||||||||||||||||||||||     
T  38946144 ctcggtacctagctaccgaggttttcctcggcactaaacgaccgaagttttcctcggtagttaactgccgaggatttccatgacagagttctacgtaaca 38946045  T
Q  164 gacgtagataccc 176  Q
    |||||||||||||    
T  38946044 gacgtagataccc 38946032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 39794101 - 39794050
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| |||||||| |||||||||||| ||||| ||||||||||||    
T  39794101 gaagttgatgaagaaaatagagtgtagggggagcaggtggctgtttcatctg 39794050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 3803307 - 3803349
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataa 180  Q
    |||||||||||| ||||||||||||| ||||||||||||||||    
T  3803307 ttcccatgacagggttctacgtaactcacgtagatacccataa 3803349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 7263352 - 7263310
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataa 180  Q
    |||||||||||| ||||||||||||| ||||||||||||||||    
T  7263352 ttcccatgacagggttctacgtaactcacgtagatacccataa 7263310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 41560338 - 41560300
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagataccc 176  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  41560338 ttcccatgacagggttctacgtaactgacgtagataccc 41560300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 12908164 - 12908244
Alignment:
Q  138 ttcccatgacagagttctacgt-aactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||||||||||||| |||| ||||| | ||||||||||||  ||||||||  ||| |||||||||| |||||||    
T  12908164 ttcccatgacagagttctacgtaaactaacgtaaaaacccataacaaagtcaaaaaat-gaacggattaaaatgttcaatac 12908244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 34921675 - 34921743
Alignment:
Q  223 tggatttggggattggatggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatct 292  Q
    |||||||| || |||||||||||||||||||| ||||||| ||||||||||| | ||| || ||||||||    
T  34921675 tggatttgaggtttggatggaagttgatgatg-aaatagtatgtagggggagcatgtggctatttcatct 34921743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 1101013 - 1101063
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| |||| |||||| |||||||| |||||||||    
T  1101013 gaagttgatgatgaaaatagtatgta-ggggagcaggtgactttttcatctg 1101063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 45475758 - 45475668
Alignment:
Q  128 ctactgagatttcccatgacagagttctacgt-aactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||| ||| |||||||||||||| |||||||| |||||||||| | ||||||||| ||   |||||||  ||| ||||||||||||||||||    
T  45475758 ctaccgaggtttcccatgacagaattctacgtaaactgacgtaaaaacccataacgaaggaaaaaaat-gaacggattaaaatgctcaatac 45475668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 1149594 - 1149556
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtg 280  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  1149594 gaagttgatgatgaaaatagtatgtagggggagcaggtg 1149556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 43949891 - 43949979
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccga 108  Q
    |||||| |||||||| || | |||||||||||| ||||||||||| ||||||| |||  ||||||| |||||||||| ||| |||| ||||    
T  43949891 agtagccgccatttt-ttcgttgtgaaaatttt-tcacaagtattcctcggtatcttgataccgaggttttcctcggcagttaactgccga 43949979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 45475577 - 45475528
Alignment:
Q  243 aagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||| |||| ||||||||||| ||||| ||||||||||||    
T  45475577 aagttgatgatgaaa-tagtatgtagggggagcaggtggctgtttcatctg 45475528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 1100719 - 1100806
Alignment:
Q  21 agctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaa 110  Q
    |||||||||||| || | |||||||||||| |||||||  || ||||| |||||| ||||||| |||||||||| | || ||||||||||    
T  1100719 agctgccatttt-ttcgttgtgaaaatttt-tcacaagagttcctcggcaccttactaccgaggttttcctcggcactacactaccgaaa 1100806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 38945875 - 38945826
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||| |||||| ||||||||||||||||||||| ||||  ||||||||||    
T  38945875 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatc 38945826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 19187155 - 19187206
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    ||||||||||||||||||| |||||||||| ||||  | ||||||||||||||    
T  19187155 atggaagttgatgatgaaa-tagtgtgtagtgggaacaagtgactgtttcatc 19187206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 24749787 - 24749755
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggag 274  Q
    ||||||||||| |||||||||||||||||||||    
T  24749787 gaagttgatgaagaaaatagtgtgtagggggag 24749755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 6505596 - 6505793
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||| |||||||||||||||| |||||||||||| |||| || |||||||||| | || |||||| || ||| | |    
T  6505596 agtagctgccatttt-ttcgttgtgaaa-ttttttcacaagtattcctcggtaccttactaccaaggttttcctcggcactacactaccaaagttttcct 6505693  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
     |||||| | || | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||| |||||||||||||||||    
T  6505694 cggtagttaactgccgaggtttcccatgacagagttctacgtaactgacgtagatacccataacaaaatcaaaaaat-gaacggattaaaatgctcaata 6505792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 7838047 - 7837850
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    |||||||| |||||| || | ||||||||||||| ||||||  || ||||| |||||| ||| ||| |||||||||| | || |||||| || ||| | |    
T  7838047 agtagctgtcatttt-ttcgttgtgaaaattttt-cacaagagttcctcggcaccttactactgaggttttcctcggcactagactaccaaagttttcct 7837950  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
     || ||| | ||   ||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||  ||| |||||||||||||||||    
T  7837949 cggcagttaactgtcgaggtttcccatgacagagtactacgtaactgacgtagatacccataacaaaactaaaaaat-gaacggattaaaatgctcaata 7837851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 7842635 - 7842809
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | |||||||  |||||||||||  || ||||| |||||| ||||||| |||||||||| | || ||||||||| ||| | |    
T  7842635 agtagctgccatttttttcgttgtgaaa--tttttcacaagagttcctcggcaccttactaccgaggttttcctcggcactacactaccgaagttttcct 7842732  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
     || ||| | || | |||  ||||||||| || ||||||||||||||||||||| |||||||||| | |||||||||    
T  7842733 cggcagttaactgccgaggattcccatgatagggttctacgtaactgacgtagaaacccataacatagccaaaaaat 7842809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 29929762 - 29929685
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  29929762 ttcccatgacagtgtt--acgtaactgacgtagatacccataacaaaaccaaaaaat-gaacggattaaaatgctcaatac 29929685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 29978916 - 29978839
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  29978916 ttcccatgacagtgtt--acgtaactgacgtagatacccataacaaaaccaaaaaat-gaacggattaaaatgctcaatac 29978839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 29929568 - 29929517
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcat 290  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29929568 atggaagttgatgatgaaaatagtgtgtagggggagcaggtgactgtttcat 29929517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 29978722 - 29978671
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcat 290  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29978722 atggaagttgatgatgaaaatagtgtgtagggggagcaggtgactgtttcat 29978671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 7837734 - 7837683
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  7837734 gaagttgatgatgaaaatagtatgtagggggagcaggtgactgtttcatctg 7837683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 29918272 - 29918323
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcat 290  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  29918272 atggaagttaatgatgaaaatagtgtgtagggggagcaggtgactgtttcat 29918323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 29967425 - 29967476
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcat 290  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  29967425 atggaagttaatgatgaaaatagtgtgtagggggagcaggtgactgtttcat 29967476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 194
Target Start/End: Original strand, 48250509 - 48250664
Alignment:
Q  39 tgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatt 138  Q
    ||||||||||||||||||||  || ||||| |||||| ||||||| |||||||||| |   |||||||||| ||| | | |  ||| | ||   |||  |    
T  48250509 tgtgaaaattttttcacaagagttcctcggcaccttactaccgaggttttcctcggcacctaactaccgaagtttgcctcgacagttaactgtcgaggat 48250608  T
Q  139 tcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||| ||||||||||||||||||||| |||||||| | | |||||||||    
T  48250609 tcccatgacagggttctacgtaactgacgtagaaacccataaaatacccaaaaaat 48250664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 9582830 - 9582751
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||||||| ||||||| ||||||| | ||||||||||||| | ||| ||  ||||||||||||||||||||||    
T  9582830 ttcccatgacagagttatacgtaattgacgtaaaaacccataacaaaagctaaatat-caaccgattaaaatgctcaatac 9582751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 13747460 - 13747516
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| |||||||||||||||||||||||||||||| | | |||||||||    
T  13747460 ttcccatgacagggttctacgtaactgacgtagatacccataaaacacccaaaaaat 13747516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 46992971 - 46993049
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||| |||||| |||| ||| |||||||||||||| |||||||||||||  ||| ||||||||||||||||||    
T  46992971 ttcccatgacagtgttctatgtaattgatgtagatacccataa-aaaaccaaaaaat-gaacggattaaaatgctcaatac 46993049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 2745166 - 2745217
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  2745166 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctg 2745217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 14398673 - 14398622
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  14398673 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctg 14398622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 21955943 - 21956002
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaa 197  Q
    |||| ||||||||||||||||||||| | |||||||||||||  ||||||||||||||||    
T  21955943 ttcctatgacagagttctacgtaactcaggtagatacccatacaaaaaccaaaaaataaa 21956002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 48250804 - 48250855
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  48250804 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctg 48250855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 50953414 - 50953363
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  50953414 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctg 50953363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 9429513 - 9429643
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    |||||||||| | ||||| | |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  9429513 ctcggtacctaactaccgtggttttcctcggcactaaacgaccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 9429612  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  9429613 gacgtagatacccctaaaacacccaaaaaat 9429643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 14398985 - 14398810
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||||||||| ||||||  || ||||| |||||| ||||||| |||||||| | | || ||||| ||| ||| | |    
T  14398985 agtagctgccatttt-ttcgttgtgaaaattttt-cacaagagttcctcggcaccttactaccgaggttttcctcagcactacactactgaagttttcct 14398888  T
Q  118 tggtagtaagcta-ctgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
     || ||| | ||  | |||  ||| |||||||| |||||||||||||||||||||||||||||| | | |||||||||    
T  14398887 cggcagttaacttgccgaggattctcatgacagggttctacgtaactgacgtagatacccataaaatagccaaaaaat 14398810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 28610774 - 28610842
Alignment:
Q  39 tgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccga 108  Q
    ||||||||||||| ||||| |||| |||||||||||| ||||||  |||||||||| |||||||||||||    
T  28610774 tgtgaaaattttt-cacaaatattcctcggtaccttactaccgacgttttcctcggcagtaaactaccga 28610842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 6741196 - 6741140
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| |||||||||||||||||||||||||| ||| | | |||||||||    
T  6741196 ttcccatgacagggttctacgtaactgacgtagatacccctaaaacacccaaaaaat 6741140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 8160661 - 8160773
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||||||||   ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  8160661 ctcggtacctagctaccgaggttttcctcggcactaaacaaccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 8160760  T
Q  164 gacgtagataccc 176  Q
    |||||||||||||    
T  8160761 gacgtagataccc 8160773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 16445005 - 16444889
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||| |||||  ||||||| |||||||||| | || ||||||||| ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  16445005 ctcggcaccttgctaccgaggttttcctcggcactacactaccgaagtttccctcggcagttaactgccgaggattcccatgacagggttctacgtaact 16444906  T
Q  164 gacgtagatacccataa 180  Q
     ||||||||||||||||    
T  16444905 cacgtagatacccataa 16444889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 30947393 - 30947449
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| |||||||||||||||||||||||||| ||| | | |||||||||    
T  30947393 ttcccatgacagggttctacgtaactgacgtagatacccctaaaacacccaaaaaat 30947449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 16444734 - 16444683
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| |||||||| |||||||||||| ||||| ||||||||||||    
T  16444734 gaagttgatgaagaaaatagagtgtagggggagcaggtggctgtttcatctg 16444683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 23443067 - 23443118
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| |||||  |||||||||||    
T  23443067 gaagttgatgaagaaaatagtgtgtagggggagcaggtggttgtttcatctg 23443118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 3949138 - 3949008
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||||||||   ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  || ||||||||| |||||||||||||    
T  3949138 ctcggtacctagctaccgaggttttcctcggcactaaacaaccgaagttttcctcggcagttaactgccgaggatttccatgacagggttctacgtaact 3949039  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  3949038 gacgtagatacccctaaaacacccaaaaaat 3949008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 23442754 - 23442914
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||||||||| ||||||  || ||||| |||||| ||||||| |||||||||| | || |||| |||  ||| | |    
T  23442754 agtagctgccatttt-ttcgatgtgaaaattttt-cacaagagttcctcggcaccttactaccgaggttttcctcggcactacactatcgacgttttcct 23442851  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataa 180  Q
     || | | | || | |||  |||||||||||  |||||| |||||||||||||||||||||||    
T  23442852 cggcaattaactgccgaggattcccatgacaaggttctatgtaactgacgtagatacccataa 23442914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 7842951 - 7843000
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    ||||||||||||||||||| |||||||| |||| ||||| ||||||||||    
T  7842951 gaagttgatgatgaaaataatgtgtaggaggagcaggtggctgtttcatc 7843000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 29929828 - 29929765
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgag 83  Q
    ||||| ||||||||| |||| ||||||||||||| |||||||||| |||||||||||| |||||||    
T  29929828 agtagttgccatttt-tttgttgtgaaaattttt-cacaagtattcctcggtaccttactaccgag 29929765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 29978982 - 29978919
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgag 83  Q
    ||||| ||||||||| |||| ||||||||||||| |||||||||| |||||||||||| |||||||    
T  29978982 agtagttgccatttt-tttgttgtgaaaattttt-cacaagtattcctcggtaccttactaccgag 29978919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 6741000 - 6740933
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctggcagttaattgcagccg 310  Q
    |||| |||||| |||| |||||||||||||||| ||||  |||||||||| ||||||||||| ||||||    
T  6741000 gaaggtgatgaagaaagtagtgtgtagggggagcaggtagctgtttcatc-ggcagttaatttcagccg 6740933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 46993165 - 46993216
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||| | |||| |||||| ||||| ||||||||||||    
T  46993165 gaagttgatgatgaaaataatatgtaaggggagcaggtggctgtttcatctg 46993216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 50953612 - 50953570
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataa 180  Q
    |||||||||||| |||||| |||||| ||||||||||||||||    
T  50953612 ttcccatgacagggttctatgtaactcacgtagatacccataa 50953570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 9582903 - 9582842
Alignment:
Q  39 tgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaa 100  Q
    ||||||||||||||||||| |||||||| | || | | ||||||| |||||||||| |||||    
T  9582903 tgtgaaaattttttcacaactatttctcagcacttaactaccgagtttttcctcggtagtaa 9582842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 13747653 - 13747702
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||| |||||| |||||||| |||||||||||| ||||| ||||||||||    
T  13747653 gaaggtgatgaagaaaatagagtgtagggggagcaggtggctgtttcatc 13747702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 6505910 - 6505962
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgta-gggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| |||| ||||||| | ||| ||||||||||||    
T  6505910 gaagttgatgatgaaaatagtatgtaggggggagcatgtggctgtttcatctg 6505962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 36817144 - 36817218
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgg 94  Q
    ||||||||||||||| || | |||||||||||| |||||||  || ||||| |||||| ||||||| ||||||||||    
T  36817144 agtagctgccatttt-ttcgttgtgaaaatttt-tcacaagagttcctcggcaccttactaccgaggttttcctcgg 36817218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 38 - 194
Target Start/End: Original strand, 18580969 - 18581126
Alignment:
Q  38 gtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagat 137  Q
    |||||||| |||||||||| ||||| |||||||||||| ||||||| ||||||| || |||||||||||||||||||||| ||||||||||||| | |      
T  18580969 gtgtgaaatttttttcacaggtattcctcggtaccttactaccgaggttttccttggcagtaaactaccgaaatttacttcggtagtaagctaccgggga 18581068  T
Q  138 ttcccatgacagagttctacgt-aactgacgtagatacccataacaaaaccaaaaaat 194  Q
    ||| |||||||||||||||||| |||||||||| | |||||||||||| || ||||||    
T  18581069 ttctcatgacagagttctacgtaaactgacgtaaaaacccataacaaagcctaaaaat 18581126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 51644119 - 51644297
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||| ||||||||||||||||  ||||||||||| || |||| |||| ||||| |||||||||||||| |||||||    
T  51644119 agtagctgccatttt-ttcgttgtgaaa-ttttttcacaagtattcatcggtaccttaatatcgaggtttttctcggcagtaaactaccgaattttactt 51644216  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgt-aactgacgtagatacccataacaaaaccaaaaaataaa 197  Q
     ||||||||||||| |||  ||||||||||||||||||| || |||| ||||| | |||||||||||| ||||||||||||    
T  51644217 cggtagtaagctaccgaggattcccatgacagagttctaagtaaactaacgtaaaaacccataacaaagccaaaaaataaa 51644297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 44049550 - 44049353
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||| ||||||||| ||||||  || |||||||||||| ||||||| |||||||||| |  | ||||||||| ||| |||    
T  44049550 agtagctgccatttt-ttcgttgtcaaaattttt-cacaagagttcctcggtaccttactaccgaggttttcctcggcatcacactaccgaatttttctt 44049453  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
     || ||| | || ||||| ||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||  ||| |||||||||||||||||    
T  44049452 cggcagttaactgctgaggtttcccatggcagagttctacgtaactgacgtagatacccgtaacaaaatcaaaaaat-gaacggattaaaatgctcaata 44049354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 4976218 - 4976021
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | |||| |||||||| ||||||  |||||||  |||||| ||||||| |||||||||| | || ||||||||| ||| | |    
T  4976218 agtagctgccatttt-ttcgttgtggaaattttt-cacaagagtttctcgacaccttactaccgaggttttcctcggcactagactaccgaagttttcct 4976121  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
      | ||| | || | ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| |||||||||||||||||    
T  4976120 ctgcagttaactgccgaggtttcccatgacagagttctacgtaactgacgtagatacccataacgaaaccaaaaaat-gaacggattaaaatgctcaata 4976022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 39 - 218
Target Start/End: Original strand, 38464409 - 38464587
Alignment:
Q  39 tgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatt 138  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||| |||||||||| |||| ||||||||  ||| | | || ||||||||||  ||  |    
T  38464409 tgtgaaaatttt-tcacaagtattcctcggtaccttactaccgaggttttcctcggcagtacactaccgatgttttcctcggcagtaagctacaaaggat 38464507  T
Q  139 tcccatgacagagttctacg-taactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    ||||||||||||||||||||  |||||||||| | |||||||||||| |||||||||  |||  |||||||||||||||||    
T  38464508 tcccatgacagagttctacgcaaactgacgtaaaaacccataacaaagccaaaaaat-gaacgaattaaaatgctcaatac 38464587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 39 - 218
Target Start/End: Complemental strand, 11494977 - 11494800
Alignment:
Q  39 tgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatt 138  Q
    ||||||||||||| |||||||||| |||||||||||| ||| ||| |||||||||| |||| ||||| ||  ||| |   || ||| | || | ||| ||    
T  11494977 tgtgaaaattttt-cacaagtattcctcggtaccttactacagaggttttcctcggcagtacactactgatgttttccacggcagttaactgccgaggtt 11494879  T
Q  139 tcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||    
T  11494878 tcccatgacagagttctatgtaattgacgtagatacccataacaaaaccaaaaaat-gaacggattaaaatgttcaatac 11494800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 90 - 218
Target Start/End: Complemental strand, 17139987 - 17139859
Alignment:
Q  90 ctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgt-aactgacgtagatacccataacaaaacca 188  Q
    ||||| ||| |||||||||||||||||| ||||||||||| | |||  |||||||||||||||||||||| |||||||||| | ||||||||||||| |     
T  17139987 ctcggtagttaactaccgaaatttacttcggtagtaagctgccgaggattcccatgacagagttctacgtaaactgacgtaaaaacccataacaaaagct 17139888  T
Q  189 aaaaataaaaccgattaaaatgctcaatac 218  Q
    ||||||  ||||||||||||||||||||||    
T  17139887 aaaaat-gaaccgattaaaatgctcaatac 17139859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 3449816 - 3449896
Alignment:
Q  137 tttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  3449816 tttcccatgacaaagttctacgtaactgacgtagatacccataacaaaaccaaaaaat-aaaccgattaaaattttcaatac 3449896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 21471237 - 21471157
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||   ||| ||||||||||||||||||    
T  21471237 ttcccatgacagagttctacgtaactgatgtagacacccataacaaaacaaaaaaaatgaacggattaaaatgctcaatac 21471157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 9890405 - 9890252
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||| |||||| ||||||| |||||||||| | || |||||||| |||| | | || ||| | || | |||  ||||||||||||||||||||||||||    
T  9890405 ctcggcaccttactaccgaggttttcctcggcactatactaccgagattttcctcggcagttaactgccgaggattcccatgacagagttctacgtaact 9890306  T
Q  164 gacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
     |||||||||||||||| | ||  |||||||| || ||| |||||||| |||||    
T  9890305 cacgtagatacccataaaataataaaaaaatacaatcgaataaaatgcacaata 9890252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 13173684 - 13173524
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||||||||| ||||||  || ||||| |||||  ||||||| |||||||||| | || ||||||||| ||| | |    
T  13173684 agtagctgccatttt-ttcgttgtgaaaattttt-cacaagagttcctcggcaccttgctaccgaggttttcctcggcactatactaccgaagtttccct 13173587  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataa 180  Q
     || ||| | || | |||  |||||||||||| ||||||||||||| ||||||||||||||||    
T  13173586 cggcagttaactgccgaggattcccatgacagggttctacgtaactcacgtagatacccataa 13173524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 4979851 - 4979902
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  4979851 gaagttgatgatgaaaatagtatgtagggggagcaggtgactgtttcatctg 4979902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 3450015 - 3450065
Alignment:
Q  243 aagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  3450015 aagttgatgatgaaaatagtgtgtagggggagcaggggactgtttcatctg 3450065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 4979664 - 4979740
Alignment:
Q  137 tttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||||||||||||    ||| |||||||||||||||||    
T  4979664 tttcccatgacagagttctac--aactgatgtagatacccataacaaaaccaaaaa--tgaacggattaaaatgctcaata 4979740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 11495047 - 11494986
Alignment:
Q  48 tttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaa 109  Q
    ||||||||||||||| |||||||||||| ||||||| |||||||||| |||| |||||||||    
T  11495047 tttttcacaagtattcctcggtaccttactaccgaggttttcctcggcagtacactaccgaa 11494986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 4768986 - 4768930
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||| |||||||    
T  4768986 ttcccatgacagagttctacgtaactgacagagatatccataacaaaacaaaaaaat 4768930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 21471045 - 21470993
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||    
T  21471045 atggaagttgacgatgaaaatagtgtgtatggggagcaggtgactgtttcatc 21470993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 38464700 - 38464751
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  38464700 atggaagttgatgatgaaaatagtgtgtaggggg---aggtgactgtttcatctg 38464751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 4768794 - 4768743
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcat 290  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  4768794 atggaaattgatgatgaaaatagtatgtagggggagcaggtgactgtttcat 4768743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 4975904 - 4975853
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    |||||||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  4975904 gaagttgatgataaaaatagtatgtagggggagcaggtgactgtttcatctg 4975853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 9890132 - 9890081
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  9890132 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctg 9890081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 15999734 - 15999785
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  15999734 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctg 15999785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 19073590 - 19073641
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  19073590 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctg 19073641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 3404207 - 3404077
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    |||||||||| | ||| ||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  3404207 ctcggtacctaactactgaggttttcctcggcactaaacgaccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 3404108  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  3404107 gacgtagatacccctaaaacacccaaaaaat 3404077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 49566141 - 49566271
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||||||||   ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  49566141 ctcggtacctagctaccgaggttttcctcggcactaaacaaccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 49566240  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  49566241 gacgtagatacccctaaaacacccaaaaaat 49566271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 11494685 - 11494632
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatct 292  Q
    ||||||||||||||||||||||||||||| ||| || ||||| |||||||||||    
T  11494685 atggaagttgatgatgaaaatagtgtgtaagggaagcaggtggctgtttcatct 11494632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 1087972 - 1087921
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| ||||  ||||||||||||    
T  1087972 gaagttgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatctg 1087921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 44049237 - 44049186
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| ||||||||||| |||||  |||||||||||    
T  44049237 gaagttgatgatgaaaatagtatgtagggggagcaggtggttgtttcatctg 44049186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 18581264 - 18581317
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||| |||||||||||||||| |||||  |||||||||||    
T  18581264 atggaagttgatgatgaaa-tagtgtgtagggggagcaggtggttgtttcatctg 18581317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 3449770 - 3449806
Alignment:
Q  39 tgtgaaaattttttcacaagtatttctcggtacctta 75  Q
    ||||||||||||||||||||||||||||||| |||||    
T  3449770 tgtgaaaattttttcacaagtatttctcggtgcctta 3449806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 51644431 - 51644481
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcat 290  Q
    ||||||||||||||||||| |||||||||||||||| || || |||||||||    
T  51644431 atggaagttgatgatgaaa-tagtgtgtagggggagcagatggctgtttcat 51644481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 19073393 - 19073435
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataa 180  Q
    |||||||||||| ||||||||||||| | ||||||||||||||    
T  19073393 ttcccatgacagggttctacgtaactcaagtagatacccataa 19073435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 4769066 - 4769003
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgag 83  Q
    ||||||||||||||| || | || |||||||||| |||||||||| |||||||||||| |||||||    
T  4769066 agtagctgccatttt-ttcgttgcgaaaattttt-cacaagtattcctcggtaccttactaccgag 4769003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 13173372 - 13173323
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    ||||||||||| ||||||||  ||||||||||| ||||| ||||||||||    
T  13173372 gaagttgatgaagaaaatagaatgtagggggagcaggtggctgtttcatc 13173323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 41023719 - 41023682
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacc 175  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  41023719 ttcccatgacagggttctacgtaactcacgtagatacc 41023682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 22893 - 23061
Alignment:
Q  48 tttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgac 147  Q
    ||||||||||||||| ||| |||||||| ||||||| |||||| ||| | |||||||||||||||||||| ||||||||||||| |||  ||||||||||    
T  22893 tttttcacaagtattcctcagtaccttaataccgaggttttccgcggcaataaactaccgaaatttacttcggtagtaagctaccgaggattcccatgac 22992  T
Q  148 agagttctacgt-aactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||| |||||||||| | | |||||||||| |||||||||   | |||||||||||||||||||    
T  22993 agagttctacgtaaactgacgta-aaaaccataacaaagccaaaaaat--gagcgattaaaatgctcaatac 23061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 55 - 216
Target Start/End: Original strand, 837 - 997
Alignment:
Q  55 caagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttc 154  Q
    |||||||| |||||||||||| ||| ||| |||||||||| | || | ||| ||| ||| | | |||||| | || | ||| ||||||||||||||||||    
T  837 caagtattcctcggtaccttactactgaggttttcctcggcattacattacggaagttttcctcggtagttaactgccgaggtttcccatgacagagttc 936  T
Q  155 tacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  937 tacgtaactgacgtagatacccataacaaaaccaaaaaat-gaacggattaaaatgctcaat 997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 44 - 218
Target Start/End: Complemental strand, 7361590 - 7361417
Alignment:
Q  44 aaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttccca 143  Q
    |||||||||||||||  ||  |||| ||||||  |||||| |||||||||| | || ||||||| | ||| | | || ||| | || | ||| |||||||    
T  7361590 aaattttttcacaagagttcatcggcaccttacaaccgaggttttcctcggcactagactaccggagttttcctgggcagttaactgccgaggtttccca 7361491  T
Q  144 tgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  7361490 tgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat-gaacggattaaaatgctcaatac 7361417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 7363054 - 7363134
Alignment:
Q  137 tttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  7363054 tttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat-aaacggattaaaatgctcaatac 7363134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 26702205 - 26702072
Alignment:
Q  85 ttttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgt-aactgacgtagatacccataacaa 183  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||| |||  || ||||||||||||||||||| || ||||||| | |||||||||||    
T  26702205 ttttcctcggcagtaaactaccgaaatttacttcggtagtaggctaccgaggatttccatgacagagttctacgtaaattgacgtaaaaacccataacaa 26702106  T
Q  184 aaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    | |||||||||  ||| ||||||||||||||||||    
T  26702105 agccaaaaaat-gaacagattaaaatgctcaatac 26702072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 2052249 - 2052447
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    |||||||| |||||| || | |||||||||||||   |||||||| |||| ||||||| ||||||| ||||  |||| | || ||||||||  ||| | |    
T  2052249 agtagctggcatttt-ttcgttgtgaaaatttttcaccaagtattcctcgataccttactaccgaggtttttttcggcaatacactaccgatgttttcct 2052347  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
     |  ||| | || | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| || ||||||||||||||    
T  2052348 cgacagttaactgccgaggtttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat-gaacggactaaaatgctcaata 2052446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 18606463 - 18606352
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||||||||| |||||||||| |||||||||||| |  |||| |||||||||| ||||||||||||||||||||||    
T  18606463 agtagctgccatttt-ttcgttgtgaaaattttt-cacaagtattcctcggtaccttactttcgaggttttcctcggcagtaaactaccgaaatttactt 18606366  T
Q  118 tggtagtaagctac 131  Q
     |||||||||||||    
T  18606365 cggtagtaagctac 18606352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 31146705 - 31146631
Alignment:
Q  142 catgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||  ||| |||||||||||||||||    
T  31146705 catgacagagttctacgtaactgacgtagatacccataacaaactcaaaaaat-gaacggattaaaatgctcaata 31146631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 18606186 - 18606132
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18606186 atggaagttgatgatgaaaatagtgtgtagggggagcaggtgactgtttcatctg 18606132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 28250330 - 28250161
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||| ||||||||||||  || ||||| |||||| ||||||| |||||||||| | || ||||||||| ||| | |    
T  28250330 agtagctgccatttt-ttcgttgtgaaa-ttttttcacaagagttcctcggcaccttactaccgaggttttcctcggcactatactaccgaagttttcct 28250233  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
     || |||    | | |||  |||||||||||| |||||||||||||||||||||||||||||| | | |||||||||    
T  28250232 cggcagt----ttc-gaggattcccatgacagggttctacgtaactgacgtagatacccataaaacacccaaaaaat 28250161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 2052561 - 2052633
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctggcagttaattgcagccgattt 314  Q
    ||||||||||||||||||||| ||||||||||| ||||  |||||||||| |  |||||| ||||||||||||    
T  2052561 gaagttgatgatgaaaatagtatgtagggggagcaggtagctgtttcatccgatagttaactgcagccgattt 2052633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 18347423 - 18347311
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    |||||||||| | ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  18347423 ctcggtacctaactaccgaggttttcctcggcactaaacgaccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 18347324  T
Q  164 gacgtagataccc 176  Q
    |||||||||||||    
T  18347323 gacgtagataccc 18347311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 7363251 - 7363302
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| ||||||||||| || |||||||||||||||    
T  7363251 gaagttgatgatgaaaatagtatgtagggggagcagatgactgtttcatctg 7363302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 23985939 - 23985992
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  23985939 atggaagttgatgatgaaa-tggtgtgtagggggagcaggtgactgtttcatctg 23985992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 7361300 - 7361256
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtt 286  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||    
T  7361300 gaagttgatgatgaaaatagtatgtagggggagcaggtgactgtt 7361256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 13388456 - 13388512
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| |||||||||||||||||||| ||||||||| | | |||||||||    
T  13388456 ttcccatgacagggttctacgtaactgacgtagttacccataaaacacccaaaaaat 13388512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 23985750 - 23985822
Alignment:
Q  145 gacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    ||||| |||||||||||||||||| || ||||||||||||  | |||||| |||| ||||||||| ||||||||    
T  23985750 gacagggttctacgtaactgacgttgaaacccataacaaatgctaaaaat-aaacggattaaaatactcaatac 23985822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 1612487 - 1612543
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| ||||||||||||| |||||||||||| ||| | | |||||||||    
T  1612487 ttcccatgacagggttctacgtaactaacgtagatacccctaaaacacccaaaaaat 1612543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 13479836 - 13479791
Alignment:
Q  247 tgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  13479836 tgatgatgaaa-tagtgtgtagggggagcaggtggctgtttcatctg 13479791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 28250024 - 28249975
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||| |||||| ||||||||||||||||||||| ||||  ||||||||||    
T  28250024 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatc 28249975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 31146511 - 31146463
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||||||||||||||| |||||||||||||||| || || ||||||||||    
T  31146511 gaagttgatgatgaaa-tagtgtgtagggggagcagatggctgtttcatc 31146463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 18347154 - 18347106
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcat 290  Q
    |||| |||||| ||||||||||||||||||||| ||||  |||||||||    
T  18347154 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcat 18347106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 18606347 - 18606300
Alignment:
Q  170 gatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||||||||||||||||  |||  |||||||||||||||||    
T  18606347 gatacccataacaaaaccaaaaaat-gaacgtattaaaatgctcaatac 18606300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 44 - 218
Target Start/End: Complemental strand, 33993707 - 33993534
Alignment:
Q  44 aaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttccca 143  Q
    ||||||||||||||||||| ||| |||||||| ||||||| |||||||||| |||| |||||| |  ||| | |  | ||||| |||| ||| ||||||     
T  33993707 aaattttttcacaagtattcctcagtaccttactaccgaggttttcctcggcagtacactaccaaggttttcctctgcagtaaactaccgaggtttcccg 33993608  T
Q  144 tgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    ||||| |||||||| ||||||||||||||||||||||||| ||||||||||   || ||||||||||||||||||    
T  33993607 tgacaaagttctacataactgacgtagatacccataacaagaccaaaaaat-gtacggattaaaatgctcaatac 33993534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 28387670 - 28387523
Alignment:
Q  70 accttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaactgacgta 169  Q
    |||||| ||||||| |||||||||| |||| ||||||||| ||| | |||| ||| | || | |||  |||||||||||| |||||||||||||||||||    
T  28387670 accttactaccgaggttttcctcggcagtacactaccgaagttttccttggcagttaactgccgaggattcccatgacagggttctacgtaactgacgta 28387571  T
Q  170 gatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    ||||||||||| | |||||||||||  ||| ||||||||||||||||||    
T  28387570 gatacccataaaataaccaaaaaat-gaacggattaaaatgctcaatac 28387523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 18538005 - 18538150
Alignment:
Q  72 cttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgt-aactgacgtag 170  Q
    |||| ||||||| |||| ||||| ||||||||||||||||||| || ||||||||||||| |||   ||||||||||||||||||||| ||||||||||     
T  18538005 cttaataccgaggttttactcggcagtaaactaccgaaatttagttcggtagtaagctaccgag-gatcccatgacagagttctacgtaaactgacgtaa 18538103  T
Q  171 atacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    | |||||||||||| |||||||||  ||  ||||||||||||||||||    
T  18538104 aaacccataacaaagccaaaaaat-gaatggattaaaatgctcaatac 18538150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 31098555 - 31098754
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||| ||||||||||||  || |||||||||| | |||||||  ||||||||| | || ||||| ||| ||| | |    
T  31098555 agtagctgccatttt-ttcgttgtgaaa-ttttttcacaagagttcctcggtacctaactaccgaggatttcctcggcattacactactgaagttttcct 31098652  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
     |  ||| | || | ||| |||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||  ||| |||||||||||||||||    
T  31098653 cgacagttaactgccgaggtttcgcataacagagttctacgtaactgacgtagatacccataacaaaatcaaaaaat-taacagattaaaatgctcaata 31098751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 27867467 - 27867665
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | |||||||||||||   ||||  || ||||| |||||| ||||||| |||||||||| | || ||||||||| ||| | |    
T  27867467 agtagctgccatttt-ttcgttgtgaaaatttttcaccaagagttcctcggcaccttactaccgaggttttcctcggcactacactaccgaagtttccct 27867565  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
     || ||| | || | |||  ||||||||| || |||||||||||||||||||||||||||||| | | |||||||||  || ||| ||||||||||||||    
T  27867566 cggcagttaactgccgaggattcccatgatagggttctacgtaactgacgtagatacccataaaacacccaaaaaat-caatcgaataaaatgctcaata 27867664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 11033084 - 11033244
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||||||||| ||||||  |||||||| |||||  ||||||| |||||||||| | || ||||||||| ||| | |    
T  11033084 agtagctgccatttt-ttcgttgtgaaaattttt-cacaagagtttctcggcaccttgctaccgaggttttcctcggcactatactaccgaagtttccct 11033181  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataa 180  Q
     || ||| | || | |||  |||||||||||| ||||||||||||| ||||||||||||||||    
T  11033182 cggcagttaactgccgaggattcccatgacagggttctacgtaactcacgtagatacccataa 11033244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 34123566 - 34123716
Alignment:
Q  44 aaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttccca 143  Q
    |||||||||||||||  || ||||| |||||| ||||||| |||||||||| |  | ||||||||| ||| | | || | | | || | |||  ||||||    
T  34123566 aaattttttcacaagagttcctcggcaccttactaccgaggttttcctcggcaccatactaccgaagttttcctcggcatttaactgccgaggattccca 34123665  T
Q  144 tgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||| ||||||||||||||||||||| |||||||||| |||||||||||    
T  34123666 tgacagtgttctacgtaactgacgtagaaacccataacataaccaaaaaat 34123716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 4203948 - 4204028
Alignment:
Q  137 tttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||| |||||  |||||| |||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  4203948 tttcccttgacatggttctatgtaactgacgtagatacccataacaaaaccaaaaaat-gaacggattaaaatgctcaatac 4204028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 13567780 - 13567897
Alignment:
Q  77 taccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagataccc 176  Q
    ||||||| |||||||||| | |||||||||||| ||| | | || ||| | || | |||  |||||||||||| ||||||||||||||||||||||||||    
T  13567780 taccgaggttttcctcggcactaaactaccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagataccc 13567879  T
Q  177 ataacaaaaccaaaaaat 194  Q
    |||| | | |||||||||    
T  13567880 ataaaacacccaaaaaat 13567897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 28387407 - 28387356
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  28387407 gaagttgatgatgaaaatagtgtgtagggggagcaggtggctgtttcatctg 28387356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 30354136 - 30354213
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
    |||| ||||||| ||||||||||||||||||||| ||||||||| |||||||||||| |||| |||||||||| ||||||    
T  30354136 ttccgatgacagggttctacgtaactgacgtagaaacccataac-aaaccaaaaaat-aaactgattaaaatgttcaata 30354213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 34123857 - 34123908
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  34123857 gaagttgatgatgaaaatagtatgtagggggagcaggtgactgtttcatctg 34123908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 38859823 - 38859983
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||||||||| ||||||  || ||||  |||||  ||||||| |||||||||| | || ||||||||| ||| | |    
T  38859823 agtagctgccatttt-ttcgttgtgaaaattttt-cacaagagttcctcgacaccttgctaccgaggttttcctcggcactatactaccgaagtttccct 38859920  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataa 180  Q
     || ||| | || | |||  |||||||||||| ||||||||||||| ||||||||||||||||    
T  38859921 cggcagttaactgccgaggattcccatgacagggttctacgtaactcacgtagatacccataa 38859983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 7021624 - 7021680
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| |||||||||||||||||||||||||||||| | | |||||||||    
T  7021624 ttcccatgacagggttctacgtaactgacgtagatacccataaaacacccaaaaaat 7021680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 25896822 - 25896878
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| |||||||||||||||||||||||||||||| | | |||||||||    
T  25896822 ttcccatgacagggttctacgtaactgacgtagatacccataaaatacccaaaaaat 25896878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 1035322 - 1035271
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  1035322 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctg 1035271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 37820547 - 37820677
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    |||||||||| | ||||||| |||||||||| | ||||| |||||| ||| | | || | | | || | |||  |||||||||||| |||||||||||||    
T  37820547 ctcggtacctaactaccgaggttttcctcggcactaaacgaccgaagttttcctcggcaattaactgccgaggattcccatgacagggttctacgtaact 37820646  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  37820647 gacgtagatacccctaaaacacccaaaaaat 37820677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 18538267 - 18538319
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatct 292  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||    
T  18538267 atggaagttgatgatgaaa-tagtgtgtagggggagcaggtggctgtttcatct 18538319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 34077906 - 34077857
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  34077906 gaaggtgatgaagaaaatagtgtgtagggggagcaggtgactgtttcatc 34077857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 34078219 - 34078044
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcac-aagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttact 116  Q
    ||||||||||||||| || | ||||||| ||||||||| |||  || ||||  |||||| ||||||| ||||||| || | || ||||||||| ||| |     
T  34078219 agtagctgccatttt-ttcgttgtgaaa-ttttttcaccaagagttcctcgacaccttactaccgaggttttccttggcactacactaccgaagtttccc 34078122  T
Q  117 ttggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    | || ||| | || | |||  |||||||||||| |||||||||||||||| ||||||||||||| | | |||||||||    
T  34078121 tcggcagttaactgccgaggattcccatgacagggttctacgtaactgacatagatacccataaaacatccaaaaaat 34078044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 7800921 - 7800972
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    |||||||||||||||||||||  ||||| |||| ||||||||||||||||||    
T  7800921 gaagttgatgatgaaaatagtacgtaggaggagcaggtgactgtttcatctg 7800972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 31098869 - 31098920
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| ||||||||||| || || ||||||||||||    
T  31098869 gaagttgatgatgaaaatagtatgtagggggagcagatggctgtttcatctg 31098920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 38860137 - 38860188
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| |||||||| |||||||||||| ||||| ||||||||||||    
T  38860137 gaagttgatgaagaaaatagagtgtagggggagcaggtggctgtttcatctg 38860188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 33993421 - 33993372
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttca 289  Q
    ||||||||||||||||||| |||||||||||||||| ||||| ||||||||    
T  33993421 atggaagttgatgatgaaa-tagtgtgtagggggagcaggtggctgtttca 33993372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 4203856 - 4203940
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaact 103  Q
    ||||||||||||||| || | |||||||||||||   ||||||||  ||||||||||| ||||||| |||||||||| ||| ||||    
T  4203856 agtagctgccatttt-ttcgttgtgaaaatttttcaccaagtattcatcggtaccttactaccgaggttttcctcggcagttaact 4203940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 7021818 - 7021867
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||| |||||| ||||||||||||||||||||| ||||| ||||||||||    
T  7021818 gaaggtgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatc 7021867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 28886098 - 28886215
Alignment:
Q  77 taccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagataccc 176  Q
    ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  |||||||||| | ||||||||||||||||||||||||||    
T  28886098 taccgaggttttcctcggcactaaacaaccgaagtttccctcggcagttaactgccgaggattcccatgaccgggttctacgtaactgacgtagataccc 28886197  T
Q  177 ataacaaaaccaaaaaat 194  Q
     ||| | | |||||||||    
T  28886198 ctaaaacacccaaaaaat 28886215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 4204145 - 4204196
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||||||||| ||||| ||||   |||||||||||    
T  4204145 gaagttgatgatgaaaatagtgtgtagagggagcaggtagttgtttcatctg 4204196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 7800731 - 7800805
Alignment:
Q  143 atgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||| ||||||  |||||||||||||| | || ||||||||||||||||||| |||  | ||||||||||||||||    
T  7800731 atgatagagtttgacgtaactgacgtaaagactcataacaaaaccaaaaaatgaaa-gggttaaaatgctcaatac 7800805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 11033397 - 11033448
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| |||||||| |||||||||||| ||||| || |||||||||    
T  11033397 gaagttgatgaagaaaatagagtgtagggggagcaggtggctatttcatctg 11033448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 30354328 - 30354378
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcat 290  Q
    ||||||||||||||||||| |||| ||||||| ||| |||||||||||||||    
T  30354328 atggaagttgatgatgaaa-tagtatgtagggtgagcaggtgactgtttcat 30354378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 21979707 - 21979654
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    |||||||||||||| |||| |||||||||||||||| | ||| ||||||||||||    
T  21979707 atggaagttgatgaggaaa-tagtgtgtagggggagcatgtggctgtttcatctg 21979654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 25897014 - 25897063
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||| |||||| |||||||| |||||||||||| ||||| ||||||||||    
T  25897014 gaaggtgatgaagaaaatagcgtgtagggggagcaggtggctgtttcatc 25897063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 27867780 - 27867829
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||| |||||| ||||||||||||||||||||| |||||  |||||||||    
T  27867780 gaaggtgatgaagaaaatagtgtgtagggggagcaggtggttgtttcatc 27867829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 28886353 - 28886402
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||| |||||| ||||||||||||||||||||| ||||  ||||||||||    
T  28886353 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatc 28886402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 37820814 - 37820863
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||| |||||| ||||||||||||||||||||| ||||  ||||||||||    
T  37820814 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatc 37820863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 7168297 - 7168209
Alignment:
Q  128 ctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  7168297 ctaccgaggtttcccatgacagagttctacgtaactgacgtagatactcataacaaaaccaaaaaat-aaaccgattaaaatgctcaata 7168209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 18206134 - 18206040
Alignment:
Q  122 agtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||||||||    
T  18206134 agtaagctaccgaggtttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat-gaatggattaaaatgctcaata 18206040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 39752645 - 39752842
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | | |||||||||||   |||||| ||| |||||||||| ||||||| |||||||||| | || ||||||||  |||   |    
T  39752645 agtagctgccatttt-ttcgttatgaaaatttttcaccaagtacttc-cggtaccttactaccgaggttttcctcggcaatacactaccgatgtttttct 39752742  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
     |  ||| | || | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||||||||    
T  39752743 cgacagttaactgccgaggtttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat-gaatggattaaaatgctcaata 39752841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 22578071 - 22577920
Alignment:
Q  67 ggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgt-aactga 165  Q
    ||||| ||| ||||||| ||||| |||| |||||||||  ||||||||||| ||||||||||||| |||  ||||||||| |||||||||||| ||||||    
T  22578071 ggtactttactaccgaggttttcttcggcagtaaactattgaaatttacttcggtagtaagctaccgaggattcccatgatagagttctacgtaaactga 22577972  T
Q  166 cgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||| | |||||||||||| || ||||||  ||| |||||||||| |||||||    
T  22577971 cgtaaaaacccataacaaagcctaaaaat-gaacggattaaaatgttcaatac 22577920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 2146695 - 2146775
Alignment:
Q  137 tttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  2146695 tttcccatgacagagttctacgtaacggacatagatacccataacaaaaccaaaaaat-gaacggattaaaatgctcaatac 2146775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 43370111 - 43370035
Alignment:
Q  141 ccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||  ||| |||||||||| |||||||    
T  43370111 ccatgacagagttctacgtaactaacgtagatactcataacaaaaccaaaaaat-gaacggattaaaatgttcaatac 43370035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 45454734 - 45454678
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||    
T  45454734 ttcccatgacagggttctacgtaactgacgtagaaacccataacataaccaaaaaat 45454678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 20547221 - 20547048
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| ||   ||||||||||||| ||||||  || ||||| |||||| ||||||| |||||||||| | |  ||||||||| ||| | |    
T  20547221 agtagctgccatttt-ttccttgtgaaaattttt-cacaagagttcctcggcaccttactaccgaggttttcctcggcactttactaccgaagttttcct 20547124  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaa 193  Q
     || ||| | || | |||  |||||||||||| |||||||||||||||||||||||||| ||| | | ||||||||    
T  20547123 cggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccgtaaaatacccaaaaaa 20547048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 7168354 - 7168290
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgag 83  Q
    ||||||||||||||| || | ||||||||||||||||||||| ||||||||||||||| |||||||    
T  7168354 agtagctgccatttt-ttcgttgtgaaaattttttcacaagtttttctcggtaccttactaccgag 7168290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 35966493 - 35966545
Alignment:
Q  142 catgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||| ||||||||||||||||||||| |||||||||| |||||||||||    
T  35966493 catgacagggttctacgtaactgacgtagaaacccataacataaccaaaaaat 35966545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 31957946 - 31957895
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  31957946 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctg 31957895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 35966684 - 35966735
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  35966684 gaagttgatgatgaaaatagtatgtagggggagcaggtggctgtttcatctg 35966735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 41744655 - 41744706
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||||||    
T  41744655 gaagttgatgatgaaaatagtgtgtagggggagcatgtggctgtttcatctg 41744706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 2146891 - 2146941
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatct 292  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||||||||||    
T  2146891 gaagttgatgatgaaaatagtatgtagggggagcaggtggctgtttcatct 2146941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 18205927 - 18205874
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  18205927 atggaagttgatgatgaaa-tagtgtgtagggggagcaggtggctgtttcatctg 18205874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 32378587 - 32378717
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||||||||   ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  32378587 ctcggtacctagctaccgaggttttcctcggcactaaacaaccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 32378686  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  32378687 gacgtagatacccctaaaacacccaaaaaat 32378717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 32432542 - 32432672
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||||||||   ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  32432542 ctcggtacctagctaccgaggttttcctcggcactaaacaaccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 32432641  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  32432642 gacgtagatacccctaaaacacccaaaaaat 32432672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 1115151 - 1115035
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    |||||||||| | ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  1115151 ctcggtacctaactaccgaggttttcctcggcactaaacgaccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 1115052  T
Q  164 gacgtagatacccataa 180  Q
     | ||||||||||||||    
T  1115051 catgtagatacccataa 1115035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 8423573 - 8423629
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| |||||||||||||||||||||||||| ||| | | |||||||||    
T  8423573 ttcccatgacagggttctacgtaactgacgtagatacccctaaaacacccaaaaaat 8423629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 30305309 - 30305365
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| |||||||||||||||||||||||||| ||| | | |||||||||    
T  30305309 ttcccatgacagggttctacgtaactgacgtagatacccctaaaacacccaaaaaat 30305365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 43369919 - 43369868
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| | ||||| ||| ||||||||||||||||||    
T  43369919 gaagttgatgatgaaaatagtatatagggagagcaggtgactgtttcatctg 43369868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 45454519 - 45454468
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| ||||||||||| |||||  |||||||||||    
T  45454519 gaagttgatgatgaaaatagtatgtagggggagcaggtggttgtttcatctg 45454468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 2146593 - 2146682
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccga 108  Q
    ||||||||||||||| || | |||||||||||||   |||||||| |||||||||||| |||| || |||||||||| | || ||||||||    
T  2146593 agtagctgccatttt-ttcgttgtgaaaatttttcaccaagtattcctcggtaccttactaccaaggttttcctcggcaatacactaccga 2146682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 7340474 - 7340344
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||||||||   ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  || ||||||||| |||||||||||||    
T  7340474 ctcggtacctagctaccgaggttttcctcggcactaaacaaccgaagttttcctcggcagttaactgccgaggatttccatgacagggttctacgtaact 7340375  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  7340374 gacgtagatacccctaaaacacccaaaaaat 7340344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 43689905 - 43689938
Alignment:
Q  223 tggatttggggattggatggaagttgatgatgaa 256  Q
    ||||||||||||||||||||||||||||||||||    
T  43689905 tggatttggggattggatggaagttgatgatgaa 43689938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 7168212 - 7168176
Alignment:
Q  257 aatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7168212 aatagtgtgtaaggggagtaggtgactgtttcatctg 7168176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 1114880 - 1114830
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| |||||||||||||| |||||| ||||| ||||||||||||    
T  1114880 gaagttgatgaagaaaatagtgtgta-ggggagcaggtggctgtttcatctg 1114830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 35389647 - 35389596
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| ||||||||||| || ||  |||||||||||    
T  35389647 gaagttgatgatgaaaatagtatgtagggggagcagatggttgtttcatctg 35389596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 39752958 - 39753009
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| |||||||||| |||||   |||||||||||    
T  39752958 gaagttgatgatgaaaatagtatgtagggggaataggtatatgtttcatctg 39753009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 43370206 - 43370117
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaa 109  Q
    ||||||||||||||| || | ||||||||||||| ||||||  || ||||| |||||| ||||||| |||||||||| | || |||||||||    
T  43370206 agtagctgccatttt-ttcgttgtgaaaattttt-cacaagagttcctcggcaccttactaccgaggttttcctcggcactacactaccgaa 43370117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 22577806 - 22577753
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||| |||||||| ||||||| ||||| ||||||||||||    
T  22577806 atggaagttgacgatgaaa-tagtgtgtggggggagcaggtggctgtttcatctg 22577753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 43689775 - 43689830
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtacctta 75  Q
    ||||||||||||||| || | |||||||||||| ||||||||||| ||||||||||||    
T  43689775 agtagctgccatttt-ttcgttgtgaaaatttt-tcacaagtattcctcggtacctta 43689830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 35966371 - 35966445
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgg 94  Q
    ||||||||||||||| || | |||||||||||| |||||||  || ||||| |||||| ||||||| ||||||||||    
T  35966371 agtagctgccatttt-ttcgttgtgaaaatttt-tcacaagagttcctcggcaccttactaccgaggttttcctcgg 35966445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 218
Target Start/End: Original strand, 21944055 - 21944195
Alignment:
Q  77 taccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagataccc 176  Q
    |||||| |||| | |||| ||||| |||||||||||||||| || |||||||||| ||   ||||||||| || ||||||||||||||||||||| || |    
T  21944055 taccgaaatttacttcggtagtaagctaccgaaatttacttcggcagtaagctaccgatgattcccatgatagggttctacgtaactgacgtagaaacgc 21944154  T
Q  177 ataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||| ||||||||| |||||||||||||||||||||||    
T  21944155 ataacaaatccaaaaaat-aaaccgattaaaatgctcaatac 21944195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 22345712 - 22345514
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | || ||||||||||   |||||||| || |||| |||| ||||||| ||||||| || |||| ||||||||| ||| | |    
T  22345712 agtagctgccatttt-ttcgttgagaaaatttttcaccaagtattccttggtatcttactaccgaggttttccttggcagtacactaccgaagttttcct 22345614  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
     || ||| | || ||||  ||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||  |||  ||||||||||||||||    
T  22345613 cggcagttaactgctgaagttttccatgacagagttctacgtaactgacgtaaatacccataacaaaatcaaaaaat-gaacgaattaaaatgctcaata 22345515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 36076284 - 36076356
Alignment:
Q  122 agtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36076284 agtaaactactgaggttttccatgacagagttctacgtaactgacgtagatacccataacaaaatcaaaaaat 36076356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 19498817 - 19498930
Alignment:
Q  103 taccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccga 202  Q
    ||||||| ||||||| ||||||||| ||| ||  |||||||||||| |||||| ||||||||||||||| | ||||||| |||| ||||||| |||||||    
T  19498817 taccgaagtttacttcggtagtaaggtaccgaagtttcccatgacatagttctgcgtaactgacgtaga-atccataaccaaacaaaaaaat-aaaccga 19498914  T
Q  203 ttaaaatgctcaatac 218  Q
    ||||||||||||||||    
T  19498915 ttaaaatgctcaatac 19498930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 8459837 - 8459917
Alignment:
Q  137 tttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  8459837 tttcctatgacagaattctacgtaacagacgtagatacccataacaaaaccaaaaaat-gaacggattaaaatgctcaatac 8459917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 36076207 - 36076293
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactac 105  Q
    ||||||| ||||||| |||| ||||||| |||||||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||    
T  36076207 agtagctaccatttt-tttgttgtgaaatttttttcacaagtattcctcggtaccttactaccgaggttttcctcggcagtaaactac 36076293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 194
Target Start/End: Original strand, 50117416 - 50117570
Alignment:
Q  39 tgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatt 138  Q
    ||||||||||||| ||||||  || ||||| |||||| ||||||| |||||||||| | || ||||||||| ||| | | |||||| | ||   |||  |    
T  50117416 tgtgaaaattttt-cacaagagttcctcggcaccttactaccgaggttttcctcggcactacactaccgaagttttcctcggtagttaactgtcgaggat 50117514  T
Q  139 tcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    | ||||||||| ||||||||||||||||||||| |||||||||| |||||||||||    
T  50117515 ttccatgacagggttctacgtaactgacgtagaaacccataacataaccaaaaaat 50117570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 19498707 - 19498815
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||| ||||||| || ||||||||| ||||||||||||| ||||||| ||||| | ||||||| ||||  |||| |||||||||||||| |||||||    
T  19498707 agtagcttccatttt-ttaggtgtgaaatttttttcacaagtttttctcgatacctaactaccgagctttttttcggcagtaaactaccgaagtttactt 19498805  T
Q  118 tggtagtaag 127  Q
     |||||||||    
T  19498806 cggtagtaag 19498815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 37015344 - 37015170
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||||||||| ||||||  || ||||| |||||| ||||||| |||||||||| |    ||||||||| ||| | |    
T  37015344 agtagctgccatttt-ttcgttgtgaaaattttt-cacaagagttcctcggcaccttactaccgaggttttcctcggcaccttactaccgaagttttcct 37015247  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
     || ||| | || | |||  ||||||||||||  |||||||||||||||||||| |||||||||| |||||||||||    
T  37015246 cggcagttaactgccgaggattcccatgacaggattctacgtaactgacgtagaaacccataacataaccaaaaaat 37015170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 21944001 - 21944083
Alignment:
Q  49 ttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctac 131  Q
    ||||||||||||||||  ||||||| | ||||||| |||||||||| ||| || ||||||||||||||| |||||||||||||    
T  21944001 ttttcacaagtatttccgggtacctaactaccgagcttttcctcggcagtcaagtaccgaaatttacttcggtagtaagctac 21944083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 22398246 - 22398086
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||||||||| ||||||  || ||||| |||||  ||||||| |||||||||| | || ||||||||| ||| | |    
T  22398246 agtagctgccatttt-ttcgttgtgaaaattttt-cacaagagttcctcggcaccttgctaccgaggttttcctcggcactatactaccgaagtttccct 22398149  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataa 180  Q
     || ||| | || | |||  |||||||||||| ||||||||||||| ||||||||||||||||    
T  22398148 cggcagttaactgccgaggattcccatgacagggttctacgtaactcacgtagatacccataa 22398086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 36076474 - 36076543
Alignment:
Q  223 tggatttggggattggatggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||||||    
T  36076474 tggatttggggtttggatggaagttgatgatg-aaatagtgcgtatggggagtaggtggctgtttcatctg 36076543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 1654886 - 1654835
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcat 290  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  1654886 atggaagttgatgatgaaaatagtgtgtagggggagcaggtaactgtttcat 1654835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 20349838 - 20349708
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||||||||   ||||||| |||||||||| | ||||| |||||||| | | | || ||| | |||| |||  |||||||||||| |||||||||||||    
T  20349838 ctcggtacctagctaccgaggttttcctcggcactaaaccaccgaaatattcctcggcagttaactaccgaggattcccatgacagggttctacgtaact 20349739  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  20349738 gacgtagatacccctaaaacacccaaaaaat 20349708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 46973630 - 46973542
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccga 108  Q
    ||||||||||||||| || | ||||||||||||| ||||| |||| |||||||||||| ||||||| |||||||||| ||| |||||||||    
T  46973630 agtagctgccatttt-ttcgttgtgaaaattttt-cacaaatattcctcggtaccttactaccgaggttttcctcggcagtcaactaccga 46973542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 23914259 - 23914108
Alignment:
Q  44 aaattttttcacaagtattt--ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcc 141  Q
    |||||||||||||||  |||  ||||| |||||| ||||||| ||||||||||   || ||||||||| ||| | | || ||| | || | ||| || ||    
T  23914259 aaattttttcacaagagttttcctcggcaccttactaccgaggttttcctcggctctacactaccgaagttttcctcggcagttaactgccgaggtt-cc 23914161  T
Q  142 catgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||| |||||||||||||||||||||||||||||| | | |||||||||    
T  23914160 catgacagggttctacgtaactgacgtagatacccataaaatacccaaaaaat 23914108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 19054181 - 19054229
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgttt 287  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||    
T  19054181 atggaagttgatgatgaaaatagtgtgtagggggagcacgtgactgttt 19054229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 4516352 - 4516262
Alignment:
Q  128 ctactgagatttcccatgacagagttctacgt-aactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||| ||| ||| ||||||||||||||||||| |||| ||||| | |||||||||||| |||||||||  ||| ||||||||||||||||||    
T  4516352 ctaccgaggttttccatgacagagttctacgtaaactaacgtaaaaacccataacaaagccaaaaaat-gaacggattaaaatgctcaatac 4516262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 5078053 - 5078002
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  5078053 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctg 5078002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 8460031 - 8460082
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||||    
T  8460031 gaagttgatgatgaaaatagtgtgtaggggaagcaggtggctgtttcatctg 8460082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 50117712 - 50117763
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  50117712 gaagttgatgatgaaaatagtgtgtagagggagcaggtggctgtttcatctg 50117763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 3948128 - 3948258
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||||||||   ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  3948128 ctcggtacctagctaccgaggttttcctcggcactaaacaaccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 3948227  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  3948228 gacgtagatacccctaaaacacccaaaaaat 3948258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 19499044 - 19499097
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||    
T  19499044 atggaagttgatgatgaaa-tagtgtgtagggggagcaggtgactctttcatctg 19499097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 38775792 - 38775922
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||||||||   ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  38775792 ctcggtacctagctaccgaggttttcctcggcactaaacaaccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 38775891  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  38775892 gacgtagatacccctaaaacacccaaaaaat 38775922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 46973344 - 46973291
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  46973344 atggaagttgatgatgaaa-tagtgtgtagggggagcaggtggctgtttcatctg 46973291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 6561843 - 6561959
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||| |||||| ||||||| |||||||| | | || |||||||| |||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  6561843 ctcggcaccttactaccgaggttttcctcagcactatactaccgagattttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 6561942  T
Q  164 gacgtagatacccataa 180  Q
     ||||||||||||||||    
T  6561943 cacgtagatacccataa 6561959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 13174172 - 13174093
Alignment:
Q  138 ttcccatgacagagttctacgtaa-ctgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
    ||||||||| |||||||||||||| |||||||| | |||||||||||| |||||||||  ||| |||||||||||| ||||    
T  13174172 ttcccatgatagagttctacgtaaactgacgtaaaaacccataacaaagccaaaaaat-gaacggattaaaatgctaaata 13174093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 13629801 - 13629685
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||| |||||  ||||||| |||||||||| | || ||||||||| ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  13629801 ctcggcaccttgctaccgaggttttcctcggcactacactaccgaagtttccctcggcagttaactgccgaggattcccatgacagggttctacgtaact 13629702  T
Q  164 gacgtagatacccataa 180  Q
     ||||||||||||||||    
T  13629701 cacgtagatacccataa 13629685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 29356432 - 29356488
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| |||||||| ||||||||||||||||||||| | | |||||||||    
T  29356432 ttcccatgacagggttctacgcaactgacgtagatacccataaaacacccaaaaaat 29356488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 9711589 - 9711636
Alignment:
Q  246 ttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  9711589 ttgatgatgaaaatagtatgtagggggagcaggtggctgtttcatctg 9711636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 13629530 - 13629479
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| |||||||| |||||||||||| ||||| ||||||||||||    
T  13629530 gaagttgatgaagaaaatagagtgtagggggagcaggtggctgtttcatctg 13629479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 23913969 - 23913918
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    |||| |||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  23913969 gaaggtgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctg 23913918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 44465891 - 44465852
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagataccca 177  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  44465891 ttcccatgacagggttctacgtaactgacgtagataccca 44465852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 44621052 - 44621103
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| |||||||| |||||||||||| ||||| ||||||||||||    
T  44621052 gaagttgatgaagaaaatagagtgtagggggagcaggtggctgtttcatctg 44621103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 3983494 - 3983364
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||||||||   ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  || ||||||||| |||||||||||||    
T  3983494 ctcggtacctagctaccgaggttttcctcggcactaaacaaccgaagttttcctcggcagttaactgccgaggatttccatgacagggttctacgtaact 3983395  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||| |||||| ||||| | |||||||||    
T  3983394 gacgtaaatacccctaacacacccaaaaaat 3983364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 4516143 - 4516094
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatct 292  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||||||||    
T  4516143 gaagttgatgatgaaa-tagtgtgtagggggagcaggtggctgtttcatct 4516094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 5078250 - 5078208
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataa 180  Q
    |||||||||||| ||||||||||||| ||||||||||||||||    
T  5078250 ttcccatgacagggttctacgtaactcacgtagatacccataa 5078208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 7980878 - 7980960
Alignment:
Q  137 tttcccatgacagagttctacgtaa-ctgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    ||||||||||||||||| ||||||| |||||||| | | | |||||||| ||||||||   ||| ||||||||||||||||||    
T  7980878 tttcccatgacagagttatacgtaaactgacgtaaaaatcgataacaaagccaaaaaaatgaacggattaaaatgctcaatac 7980960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 13173976 - 13173927
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttca 289  Q
    ||||||||||||||| |||||||| ||||||||||||||||| ||||||||    
T  13173976 atggaagttgatgat-aaaatagtatgtagggggagtaggtggctgtttca 13173927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 7981071 - 7981123
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatct 292  Q
    ||||||||||||||||||| |||||||||||||||| |||||  ||||||||||    
T  7981071 atggaagttgatgatgaaa-tagtgtgtagggggagcaggtggttgtttcatct 7981123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 29356625 - 29356674
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||| |||||| ||||||||||||||||||||| ||||| ||||||||||    
T  29356625 gaaggtgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatc 29356674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 41453951 - 41453902
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||| |||||| ||||||||||||||||||||| ||||| ||||||||||    
T  41453951 gaaggtgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatc 41453902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 44465709 - 44465660
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||| |||||| ||||||||||||||||||||| ||||| ||||||||||    
T  44465709 gaaggtgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatc 44465660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 15047615 - 15047559
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| |||||||||||||||| ||||||||| ||| | | |||||||||    
T  15047615 ttcccatgacagggttctacgtaactgacatagatacccctaaaacacccaaaaaat 15047559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 22397932 - 22397881
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| |||||||| |||||||||||| ||||| || |||||||||    
T  22397932 gaagttgatgaagaaaatagagtgtagggggagcaggtggctatttcatctg 22397881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 30905882 - 30905832
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||| | ||||| ||||||||||||    
T  30905882 gaagttgatgaagaaaatagtgtgtaggggg-gcaggtggctgtttcatctg 30905832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 37015030 - 37014979
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||| ||| ||||||||||  ||||| ||||||||||||    
T  37015030 gaagttgatgatgaaaaaagtatgtagggggatcaggtggctgtttcatctg 37014979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 41454261 - 41454088
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcac-aagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttact 116  Q
    ||||||||||||||| || | ||||||| ||||||||| |||  || ||||| |||| | ||||||| |||||||||| | |||||||||||| ||| |     
T  41454261 agtagctgccatttt-ttcgttgtgaaa-ttttttcaccaagagttcctcggcacctaactaccgaggttttcctcggcactaaactaccgaagttttcc 41454164  T
Q  117 ttggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    | || || |  || | |||  ||| |||||||| ||||||||||| |||| ||||||||||||| | | |||||||||    
T  41454163 tcggcagaa--ctgccgaggattctcatgacagggttctacgtaattgacatagatacccataaaacacccaaaaaat 41454088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 44620856 - 44620898
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataa 180  Q
    |||||||||||| ||||||||||||| ||||||| ||||||||    
T  44620856 ttcccatgacagggttctacgtaactcacgtagaaacccataa 44620898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 46973548 - 46973457
Alignment:
Q  128 ctactgagatttcccatgacaga-gttctacgtaa-ctgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||| ||| ||| |||||||||| ||||||||||| |||||||| | || ||||||||| ||||||||| || |  |||||||||||||||||    
T  46973548 ctaccgaggttttccatgacagaagttctacgtaaactgacgtaaaaactcataacaaagccaaaaaatgaa-cgaattaaaatgctcaatac 46973457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 7054 - 7133
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  7054 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat-gaacggattaaaatgctcaatac 7133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 274
Target Start/End: Original strand, 7245 - 7280
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggag 274  Q
    ||||||||||||||||||||||||||||||||||||    
T  7245 atggaagttgatgatgaaaatagtgtgtagggggag 7280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 6971 - 7040
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttc 89  Q
    ||||||||||||||| || | |||||||||||| ||||||||||| |||||||||||| ||| ||| |||||    
T  6971 agtagctgccatttt-ttcgttgtgaaaatttt-tcacaagtattcctcggtaccttactacagaggttttc 7040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 47061261 - 47061182
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  47061261 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat-gaacggattaaaatgctcaatac 47061182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 29593289 - 29593340
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  29593289 gaagttgatgatgaaaatagtgtgtagggggagcaggtggctgtttcatctg 29593340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 15060012 - 15059896
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||| |||||| ||||||| |||||||||| | |||||||||||| ||| | | || ||| | || | |||  |||||||||||  |||||||||||||    
T  15060012 ctcggcaccttactaccgaggttttcctcggcactaaactaccgaagttttcctcggcagttaactgccgaggattcccatgacatggttctacgtaact 15059913  T
Q  164 gacgtagatacccataa 180  Q
     ||||||||||||||||    
T  15059912 cacgtagatacccataa 15059896  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 42499547 - 42499496
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  42499547 gaagttgatgaagaaaataatgtgtagggggagcaggtgactgtttcatctg 42499496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 47741876 - 47741825
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  47741876 gaagttgatgatgaaaatagtatgtagggggagcaggtggctgtttcatctg 47741825  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 47061068 - 47061014
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||||||||||||| |||  ||||| ||||||||||||    
T  47061068 atggaagttgatgatgaaaatagtgtgtaggaggaagaggtggctgtttcatctg 47061014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 30786858 - 30786802
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| |||||||||||||||||||||||||| ||| | | |||||||||    
T  30786858 ttcccatgacagggttctacgtaactgacgtagatacccctaaaacacccaaaaaat 30786802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 45763713 - 45763657
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| |||||||||||||||||||||||||| ||| | | |||||||||    
T  45763713 ttcccatgacagggttctacgtaactgacgtagatacccctaaaacacccaaaaaat 45763657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 18105781 - 18105651
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    |||||||||  | ||||||| |||||||||| | |||||  ||||| ||| | | || ||| | || |||||  |||||||||||| |||||| ||||||    
T  18105781 ctcggtaccaaactaccgaggttttcctcggcactaaacagccgaagttttcctcggcagttaactgctgaggattcccatgacagggttctatgtaact 18105682  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  18105681 gacgtagatacccctaaaacacccaaaaaat 18105651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 43623812 - 43623942
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||||||||   ||||||| |||||||||| | ||||| |||||| ||| | | || ||| | || | |||  |||||||| ||| |||||||||||||    
T  43623812 ctcggtacctagctaccgaggttttcctcggcactaaacaaccgaagttttcctcggcagttaactgccgaggattcccatgccagggttctacgtaact 43623911  T
Q  164 gacgtagatacccataacaaaaccaaaaaat 194  Q
    ||||||||||||| ||| | | |||||||||    
T  43623912 gacgtagatacccctaaaacacccaaaaaat 43623942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 47742043 - 47741992
Alignment:
Q  166 cgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    ||||||||||||||| |||||||||||||  ||| ||||||||||||||||||    
T  47742043 cgtagatacccataaaaaaaccaaaaaat-gaacggattaaaatgctcaatac 47741992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 618429 - 618528
Alignment:
Q  77 taccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagataccc 176  Q
    ||||||| |||||||||| | |||||||||||| ||| | | || ||| | || |  ||  |||||||||||| ||||||||||||| ||||||||||||    
T  618429 taccgaggttttcctcggcactaaactaccgaagttttcctcggcagttaactgccaaggattcccatgacagggttctacgtaactaacgtagataccc 618528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 47061325 - 47061271
Alignment:
Q  39 tgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgg 94  Q
    ||||||||||||| |||||||||| |||||||||||  ||||||| ||||||||||    
T  47061325 tgtgaaaattttt-cacaagtattcctcggtaccttgctaccgaggttttcctcgg 47061271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 618685 - 618734
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||| |||||| ||||||||||||||||||||| ||||  ||||||||||    
T  618685 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatc 618734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 36185950 - 36185898
Alignment:
Q  239 atggaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatct 292  Q
    ||||||||||||||||||| |||||||||||||||  ||||| || ||||||||    
T  36185950 atggaagttgatgatgaaa-tagtgtgtagggggatcaggtggctatttcatct 36185898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 597 - 677
Alignment:
Q  137 tttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatac 218  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  597 tttcccatgacaaagttctacgtaactgacgtagatacccataacaaaaccaaaaaat-aaaccgattaaaattttcaatac 677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 796 - 846
Alignment:
Q  243 aagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  796 aagttgatgatgaaaatagtgtgtagggggagcaggggactgtttcatctg 846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 551 - 587
Alignment:
Q  39 tgtgaaaattttttcacaagtatttctcggtacctta 75  Q
    ||||||||||||||||||||||||||||||| |||||    
T  551 tgtgaaaattttttcacaagtatttctcggtgcctta 587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 5611 - 5528
Alignment:
Q  137 tttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatacat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||  ||||||||| |||||||||    
T  5611 tttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaaatgaacatattaaaatgttcaatacat 5528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 5410 - 5359
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  5410 gaagttgatgatgaaaatagtatgtagggggagcaggtggctgtttcatctg 5359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 16128 - 15931
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    |||| |||||||||| || | ||||||||||||| ||||||  ||  |||| |||||| ||||||| | |||||||| | || ||||||||| ||| | |    
T  16128 agtaactgccatttt-ttcgttgtgaaaattttt-cacaagagttcttcggcaccttactaccgaggtattcctcggcactacactaccgaagttttcct 16031  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaata 217  Q
     || ||| | || | ||  |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||  ||| ||||||||||| |||||    
T  16030 cggcagttaactgccgaagtttcccatgacatagttctacgtaactgacgtagatacccataacaaaatcaaaaaat-gaacggattaaaatgcacaata 15932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 15816 - 15765
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  15816 gaagttgatgatgaaaatagtatgtagggggagcaggtgactgtttcatctg 15765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 50492 - 50323
Alignment:
Q  18 agtagctgccattttatttggtgtgaaaattttttcacaagtatttctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactt 117  Q
    ||||||||||||||| || | ||||||| ||||||||||||  || ||||| |||||| ||||||| |||||||||| | || ||||||||| ||| | |    
T  50492 agtagctgccatttt-ttcgttgtgaaa-ttttttcacaagagttcctcggcaccttactaccgaggttttcctcggcactatactaccgaagttttcct 50395  T
Q  118 tggtagtaagctactgagatttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
     || |||    | | |||  |||||||||||| |||||||||||||||||||||||||||||| | | |||||||||    
T  50394 cggcagt----ttc-gaggattcccatgacagggttctacgtaactgacgtagatacccataaaacacccaaaaaat 50323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 50186 - 50137
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatc 291  Q
    |||| |||||| ||||||||||||||||||||| ||||  ||||||||||    
T  50186 gaaggtgatgaagaaaatagtgtgtagggggagcaggtagctgtttcatc 50137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 4140 - 4221
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaataaaaccgattaaaatgctcaatacat 220  Q
    ||||||||||||  |||||||||||||||||||| |||||||| | ||||||||||| ||| ||| |||||||| ||||||||    
T  4140 ttcccatgacaggattctacgtaactgacgtagaaacccataaaataaccaaaaaatcaaa-cgaataaaatgcacaatacat 4221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 11607 - 11551
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaat 194  Q
    |||||||||||| |||||||||||||||||||||||||||||| | | |||||||||    
T  11607 ttcccatgacagggttctacgtaactgacgtagatacccataaaatagccaaaaaat 11551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 11413 - 11362
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||    
T  11413 gaagttgatgaagaaaatagtatgtagggggagcaggtggctgtttcatctg 11362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 995 - 944
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  995 gaagttgatgaagaaaatagtgtgtagggggagcaggtggctgtttcatctg 944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 1266 - 1150
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||| |||||| ||||||| |||||||||| | || ||||||||  ||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  1266 ctcggcaccttactaccgaggttttcctcggcactatactaccgaggttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 1167  T
Q  164 gacgtagatacccataa 180  Q
     ||||||||||||||||    
T  1166 cacgtagatacccataa 1150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 17033 - 17149
Alignment:
Q  64 ctcggtaccttattaccgagattttcctcgggagtaaactaccgaaatttactttggtagtaagctactgagatttcccatgacagagttctacgtaact 163  Q
    ||||| |||||| ||||||| |||||||| | | || |||||||| |||| | | || ||| | || | |||  |||||||||||| |||||||||||||    
T  17033 ctcggcaccttactaccgaggttttcctcagcactatactaccgagattttcctcggcagttaactgccgaggattcccatgacagggttctacgtaact 17132  T
Q  164 gacgtagatacccataa 180  Q
     ||||||||||||||||    
T  17133 cacgtagatacccataa 17149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 358 - 409
Alignment:
Q  242 gaagttgatgatgaaaatagtgtgtagggggagtaggtgactgtttcatctg 293  Q
    ||||||||||| ||||||||||||||||||||| | ||  ||||||||||||    
T  358 gaagttgatgaagaaaatagtgtgtagggggagcaagtagctgtttcatctg 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 161 - 203
Alignment:
Q  138 ttcccatgacagagttctacgtaactgacgtagatacccataa 180  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||    
T  161 ttcccatgacagggttctacataactcacgtagatacccataa 203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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