View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7839_low_23 (Length: 373)

Name: NF7839_low_23
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7839_low_23
NF7839_low_23
[»] chr6 (22 HSPs)
chr6 (150-355)||(33263472-33263677)
chr6 (185-355)||(33401455-33401625)
chr6 (150-355)||(33286380-33286591)
chr6 (181-352)||(33388879-33389050)
chr6 (201-355)||(33305318-33305472)
chr6 (1-57)||(33263790-33263846)
chr6 (276-351)||(31561982-31562057)
chr6 (199-354)||(33643701-33643856)
chr6 (151-355)||(33272634-33272841)
chr6 (197-355)||(9167601-9167753)
chr6 (150-244)||(33359655-33359752)
chr6 (184-243)||(33058513-33058572)
chr6 (197-243)||(33410916-33410962)
chr6 (1-51)||(33401761-33401811)
chr6 (207-244)||(31561898-31561935)
chr6 (272-355)||(33058398-33058481)
chr6 (1-54)||(33286686-33286739)
chr6 (1-56)||(9167913-9167968)
chr6 (1-54)||(33058707-33058760)
chr6 (14-55)||(33411095-33411136)
chr6 (4-52)||(33389215-33389263)
chr6 (4-52)||(33643491-33643539)
[»] chr2 (1 HSPs)
chr2 (150-355)||(17439864-17440075)
[»] chr4 (6 HSPs)
chr4 (274-347)||(31498063-31498136)
chr4 (290-354)||(31033075-31033139)
chr4 (276-347)||(31503299-31503370)
chr4 (202-345)||(31478075-31478218)
chr4 (290-347)||(31527261-31527318)
chr4 (16-56)||(31497818-31497858)
[»] scaffold1408 (2 HSPs)
scaffold1408 (207-246)||(1596-1635)
scaffold1408 (278-350)||(1468-1540)
[»] scaffold0428 (2 HSPs)
scaffold0428 (207-246)||(7342-7381)
scaffold0428 (278-350)||(7214-7286)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 150 - 355
Target Start/End: Complemental strand, 33263677 - 33263472
Alignment:
Q  150 ttaggaaaagcaagttaaagccatagttttggatgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtac 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33263677 ttaggaaaagcaagttaaagccatagttttggatgatgaagaggtggacgttgaacaattgtcaaaaatgagtaatcttagattgctcatcatcaggtac 33263578  T
Q  250 ggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcacc 349  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33263577 ggaatgtatatctcaggaagcccaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcacc 33263478  T
Q  350 ccaatg 355  Q
    ||||||    
T  33263477 ccaatg 33263472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 185 - 355
Target Start/End: Complemental strand, 33401625 - 33401455
Alignment:
Q  185 atgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttc 284  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| | |||||||||| || |     | ||||||||||| |||||| || ||||||    
T  33401625 atgaagaggtggatgttgaacacttatcaaaaatgagtaatcttagacttctcatcatcaagtgcaattggaatatctcaggaggctcaaattttctttc 33401526  T
Q  285 aaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatg 355  Q
    |||| |||| ||||||||||| ||| ||||||||||||  |||||||||||| ||||||||||||||||||    
T  33401525 aaacgaattaagatatgttgattggcatgaatatcctttcaagtatttgccaacaagttttcaccccaatg 33401455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 150 - 355
Target Start/End: Complemental strand, 33286591 - 33286380
Alignment:
Q  150 ttaggaaaagcaagttaaagccatagttttggatgatgaagaggtgg------acgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 243  Q
    |||||||||||| ||||||||| |||||||| ||||||||||||| |      | |||||||||||||||||||||||||||||||||||||||||||||    
T  33286591 ttaggaaaagcatgttaaagccttagttttgaatgatgaagaggttggattgaatgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 33286492  T
Q  244 aggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagtt 343  Q
    | ||  ||  || ||||||| ||||||  |    |||||||||||||||| ||||||||| |||||  || ||||||||  || ||||||||||||| ||    
T  33286491 atgtggggtgtgaatatctccggaagcctattgagtctttcaaacaaattaagatatgttcagtggactggatatcctttcaaatatttgccatcaaatt 33286392  T
Q  344 ttcaccccaatg 355  Q
    ||||||||||||    
T  33286391 ttcaccccaatg 33286380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 352
Target Start/End: Complemental strand, 33389050 - 33388879
Alignment:
Q  181 gatgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtc 280  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||  ||   | ||||| || | ||| ||    |||    
T  33389050 gatgttgaagaggtggacgttgaacagttgtcaaaaatgagtaatcttagattactcatcatcaagtggggtccgaatatcccaagtagcccatcgagtc 33388951  T
Q  281 tttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcacccca 352  Q
    ||||||||| ||| ||||||||||||||| || | |||||||  ||||||||||||||||||||||||||||    
T  33388950 tttcaaacacattaagatatgttgagtggaattattatcctttcaagtatttgccatcaagttttcacccca 33388879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 201 - 355
Target Start/End: Complemental strand, 33305472 - 33305318
Alignment:
Q  201 tgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatat 300  Q
    ||||||| |||||||||||| |||||||||||| |||||| ||| ||||||   ||  |||||||||||  || |  || ||||||||||||| | ||||    
T  33305472 tgaacacgtgtcaaaaatgaataatcttagattcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaattaaaatat 33305373  T
Q  301 gttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatg 355  Q
    ||||| ||| ||||||||||||  |||||||||||||||| ||||||||||||||    
T  33305372 gttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatg 33305318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33263846 - 33263790
Alignment:
Q  1 ggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagc 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33263846 ggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagc 33263790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 351
Target Start/End: Original strand, 31561982 - 31562057
Alignment:
Q  276 ttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcacccc 351  Q
    ||||||||| |||||||| |||||||||||||||  |||||||||||  |||||||||||||||||||||||||||    
T  31561982 ttgtctttcgaacaaattaagatatgttgagtggcttgaatatcctttcaagtatttgccatcaagttttcacccc 31562057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 354
Target Start/End: Original strand, 33643701 - 33643856
Alignment:
Q  199 gttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagat 298  Q
    |||||| ||||||||||||||||||||||||||||||| ||||| | || |||   | |||||| || |||| ||||||||||||||||  |||| ||||    
T  33643701 gttgaatacttgtcaaaaatgagtaatcttagattgctgatcataaagtgcggttggcatatcttagaaagcccaagttgtctttcaaaggaattaagat 33643800  T
Q  299 atgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaat 354  Q
    ||||||| ||| ||   |||||||  | || ||||||||||| |||||| ||||||    
T  33643801 atgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaat 33643856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 151 - 355
Target Start/End: Complemental strand, 33272841 - 33272634
Alignment:
Q  151 taggaaaagcaagttaaagccatagt--tttgga-tgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggt 247  Q
    ||||||||||| ||| |||||||||   |||||| | ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |||| ||    
T  33272841 taggaaaagcatgttgaagccatagaactttggagttatgaagaagtggtcgttgaacacttggcaaaaatgagtaatcttagattgctcataatcaagt 33272742  T
Q  248 acggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttca 347  Q
     |||   | ||||| |||| ||   |    | ||||||||   ||| ||||||||||||||||||| ||||||||  |||| | | ||| ||||||||||    
T  33272741 gcggtcggaatatcccaggtagtctatcgagcctttcaaatgcattaagatatgttgagtgggatggatatcctttcaagtgtctaccaacaagttttca 33272642  T
Q  348 ccccaatg 355  Q
    ||||||||    
T  33272641 ccccaatg 33272634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 355
Target Start/End: Complemental strand, 9167753 - 9167601
Alignment:
Q  197 acgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgag 296  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  |||||   | |||||| |       || || ||||||| ||| |||| ||    
T  9167753 acgttgaacacttgtcaaaaatgagtagtcttagattgctcatcatcaaatacggttggaatatctta------ccatgtagtctttcgaacgaattaag 9167660  T
Q  297 atatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatg 355  Q
    |||| |||||||| ||  ||||||||  |||||||||||||| ||||||||| ||||||    
T  9167659 atatcttgagtggtatcgatatcctttcaagtatttgccatcgagttttcacgccaatg 9167601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 33359752 - 33359655
Alignment:
Q  150 ttaggaaaagcaagttaaagccatagttttggatgatgaaga---ggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatca 244  Q
    ||||||||| || ||| ||||||||||||||  | ||||| |   ||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  33359752 ttaggaaaaacatgttgaagccatagttttgattcatgaaaagatggtggactttgaacacttgtcaaaaatgagtaatcttagagtgctcatcatca 33359655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 33058572 - 33058513
Alignment:
Q  184 gatgaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 243  Q
    |||||||||| |||| |||||||||||||||||||||||||||| ||||||||| |||||    
T  33058572 gatgaagaggcggactttgaacacttgtcaaaaatgagtaatctcagattgctcttcatc 33058513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 33410962 - 33410916
Alignment:
Q  197 acgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatc 243  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  33410962 acgttgaacacttttcaaaaatgagtaatcttagattgctcatcatc 33410916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33401811 - 33401761
Alignment:
Q  1 ggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaa 51  Q
    |||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  33401811 ggttgtggtctgcaaaacaactctacgatgttaagatggagaatatggtaa 33401761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 31561898 - 31561935
Alignment:
Q  207 cttgtcaaaaatgagtaatcttagattgctcatcatca 244  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31561898 cttgtcaaaaatgagtaatcttagattgctcatcatca 31561935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 355
Target Start/End: Complemental strand, 33058481 - 33058398
Alignment:
Q  272 caagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatg 355  Q
    |||| |||||||| |||||||| |||| |||| | |||  |  ||||||||| |||||||||||||||| ||||||||||||||    
T  33058481 caagctgtctttcgaacaaattaagatttgttcactggtttagatatccttccaagtatttgccatcaaattttcaccccaatg 33058398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33286739 - 33286686
Alignment:
Q  1 ggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 54  Q
    ||||||||||| || ||||| |||||||||||| | ||||||||||||||||||    
T  33286739 ggttgtggtccacagaacaactctacaatgttatgttggagaatatggtaaagt 33286686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 9167968 - 9167913
Alignment:
Q  1 ggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtag 56  Q
    |||||||||||  ||||||| |||||||||||  |||||||| |||||||||||||    
T  9167968 ggttgtggtccaaaaaacaactctacaatgttgcgatggagagtatggtaaagtag 9167913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33058760 - 33058707
Alignment:
Q  1 ggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 54  Q
    ||||||||||| || ||||| ||||| |||||| | ||||||||||||||||||    
T  33058760 ggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagt 33058707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 33411136 - 33411095
Alignment:
Q  14 aaaacaattctacaatgttaagatggagaatatggtaaagta 55  Q
    ||||||| ||||||| |||| |||||||||||||||||||||    
T  33411136 aaaacaactctacaacgttatgatggagaatatggtaaagta 33411095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 33389263 - 33389215
Alignment:
Q  4 tgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaa 52  Q
    ||||||||  ||||||| |||||||||||| ||||||||| ||||||||    
T  33389263 tgtggtcccaaaaacaactctacaatgttacgatggagaaaatggtaaa 33389215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 33643491 - 33643539
Alignment:
Q  4 tgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaa 52  Q
    ||||||||  ||||||| |||||||||||  ||||||||||||||||||    
T  33643491 tgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 33643539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 150 - 355
Target Start/End: Original strand, 17439864 - 17440075
Alignment:
Q  150 ttaggaaaagcaagttaaagccatagttttggatgat---gaagaggtggacgttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcagg 246  Q
    |||||||||||| ||| |||||||||||||| |  ||   ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||       
T  17439864 ttaggaaaagcatgttgaagccatagttttgaaatatactgaagaggtggacgctgaacatttgtcaaaaatgagtaatcttagattgctcatcatcgtc 17439963  T
Q  247 tacggaa-tgta--tatctcaggaagctcaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagtt 343  Q
     ||   | || |  ||||||||||  | ||||||||||||| |||||||| |||||||||||||||  | |||||||||  |||||||||||| ||||||    
T  17439964 aaccatactgcaactatctcaggattcccaagttgtctttcgaacaaattaagatatgttgagtggcctaaatatcctttcaagtatttgccaacaagtt 17440063  T
Q  344 ttcaccccaatg 355  Q
    ||||||||||||    
T  17440064 ttcaccccaatg 17440075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 31498063 - 31498136
Alignment:
Q  274 agttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttca 347  Q
    ||||||||||| |||||||| |||||| |||||||| ||||||||||||  | |||||| ||||||| ||||||    
T  31498063 agttgtctttccaacaaattaagatattttgagtggcatgaatatcctttcatgtatttaccatcaaattttca 31498136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 31033139 - 31033075
Alignment:
Q  290 aattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaat 354  Q
    ||||||||||||||||||||  |||||||||||  | |||||||||  |||||||||||||||||    
T  31033139 aattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcaccccaat 31033075  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 31503299 - 31503370
Alignment:
Q  276 ttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttca 347  Q
    ||||||||| ||| |||| ||||||||||| |||  |||||||||||  ||||||||||| |||||||||||    
T  31503299 ttgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccgtcaagttttca 31503370  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 345
Target Start/End: Original strand, 31478075 - 31478218
Alignment:
Q  202 gaacacttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagctcaagttgtctttcaaacaaattgagatatg 301  Q
    ||||||||||| ||||||||  ||||||||||||||||| ||||||      || | | |||||||| |   |||||| |||| ||  || | |||||||    
T  31478075 gaacacttgtctaaaatgagacatcttagattgctcatcgtcaggtgtcctgtgaacacctcaggaaaccttagttgtttttctaaagaactaagatatg 31478174  T
Q  302 ttgagtgggatgaatatccttcaaagtatttgccatcaagtttt 345  Q
    ||||||||  |||||||||||  |||||||||||||| ||||||    
T  31478175 ttgagtggagtgaatatcctttcaagtatttgccatcgagtttt 31478218  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 31527318 - 31527261
Alignment:
Q  290 aattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttca 347  Q
    |||| |||||||||||||||   ||||||||||  | |||||||||||||||||||||    
T  31527318 aattaagatatgttgagtggcgggaatatcctttcatgtatttgccatcaagttttca 31527261  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 31497818 - 31497858
Alignment:
Q  16 aacaattctacaatgttaagatggagaatatggtaaagtag 56  Q
    ||||||||||| |||||| | ||||||||||||||||||||    
T  31497818 aacaattctacgatgttatgttggagaatatggtaaagtag 31497858  T

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Target: scaffold1408 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 1635 - 1596
Alignment:
Q  207 cttgtcaaaaatgagtaatcttagattgctcatcatcagg 246  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  1635 cttgtcaacaatgagtaatcttagattgctaatcatcagg 1596  T

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Target: scaffold1408; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 1540 - 1468
Alignment:
Q  278 gtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccc 350  Q
    |||| |||||||||||  |||||||| | |||  || ||||||||  |||||| |||||||||||||||||||    
T  1540 gtctatcaaacaaattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccc 1468  T

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Target: scaffold0428 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 7381 - 7342
Alignment:
Q  207 cttgtcaaaaatgagtaatcttagattgctcatcatcagg 246  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  7381 cttgtcaacaatgagtaatcttagattgctaatcatcagg 7342  T

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Target: scaffold0428; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 7286 - 7214
Alignment:
Q  278 gtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccc 350  Q
    |||| |||||||||||  |||||||| | |||  || ||||||||  |||||| |||||||||||||||||||    
T  7286 gtctatcaaacaaattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccc 7214  T

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