View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_24 (Length: 370)
Name: NF7839_low_24
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 31057286 - 31056930
Alignment:
| Q |
1 |
tggattgggaaggatataaattcgagtcgtttggataacttttattggatgttggcagctattagttctttgaatgtgtgcgtgtttctcgtcatatcaa |
100 |
Q |
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| T |
31057286 |
tggattgggaaggatataaattcgagtcgtttggataacttttattggatgttggcagctattagttctttgaatgtgtgcgtgtttctcgtcatatcaa |
31057187 |
T |
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| Q |
101 |
agaggtatacttataagaccgtacagaggagaactacggaaactaatggttacaaaagcgatgatgagagtatgaaggaagctactaaggtctagtcctc |
200 |
Q |
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| T |
31057186 |
agaggtatacttataagaccgtacagaggagaactacggaaactaatggttacaaaagcgatgatgagagcatgaaggaagctactaaggtctagtcctc |
31057087 |
T |
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| Q |
201 |
tactatttcttcatgtgaatgaaacctatgatgcataatatttataaggatttaaaaatatgcatactacaagtgtaaatatattacaatattatttagt |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31057086 |
tactatttcttcatgtgaatgaaacctatgattcataatatttataaggatttaaaaatatgcatactacaagtgtaaatatattacaatattatttagt |
31056987 |
T |
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| Q |
301 |
gttatgtgattgcattattcttgttttgttaattgcagttttgcacacttcaatact |
357 |
Q |
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| T |
31056986 |
gttatgtgattgcattattcttgttttgttaattgcagttttgcacacttcaatact |
31056930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 31074778 - 31074661
Alignment:
| Q |
1 |
tggattgggaaggatataaattcgagtcgtttggataacttttattggatgttggcagctattagttctttgaatgtgtgcgtgtttctcgtcatatcaa |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| | |||||||| |||| | | |||| || || ||| |
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| T |
31074778 |
tggattgggaaggatataaattcaagtcgtttggataggttttattggatgttggcaattattaatgctttgaatttgtgtgcttatctcttcttagcaa |
31074679 |
T |
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| Q |
101 |
agaggtatacttataaga |
118 |
Q |
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|||||||||||||||||| |
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| T |
31074678 |
agaggtatacttataaga |
31074661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 31063368 - 31063251
Alignment:
| Q |
1 |
tggattgggaaggatataaattcgagtcgtttggataacttttattggatgttggcagctattagttctttgaatgtgtgcgtgtttctcgtcatatcaa |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| | | |||||||| |||| | | |||| || || ||| |
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| T |
31063368 |
tggattgggaaggatataaattcaagtcgtttggataggttttattggatgttggcaattatcaatgctttgaatttgtgtgcttatctcttcttagcaa |
31063269 |
T |
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| Q |
101 |
agaggtatacttataaga |
118 |
Q |
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|||||||||||||||||| |
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| T |
31063268 |
agaggtatacttataaga |
31063251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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